Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2463 ATGTCGTCAATTATACAGATTTCTCGTGTAGATTTGGAGCAGGGAAGCCATCGAAGTGACATGAGTGCCGAGGCTAGCATTTGCTTCTCTGATGTTGAAGAGGGTTCTAGCTATTCCCACTTCTATTCAACAAATGGTGGCTCATACGATGAGTATAGCTTTGCATTTGTTTCTGATCCTGAGGTTATTGAGGACCTTCCCGAGTCTGGAAGAGCTTCTTCTGTCACTGAATGTTCAGTGGAGGTGGAAATTGAAGGTGGGGTTCCTGAAATTAAGGTGCATTTGGATGTAGAAGAGAGAGAGTGTAGGATTTGTCACATGGGTTTGGAAAGTGAAAGCCATGAATCTGGGGTTCCAATTGAATTGGGTTGTTCTTGCAAGGATGATCTTGCAGCTGCTCATAAACTCTGTGCTGAAACCTGGTTCAAGATCAAAGGGAACAGGACATGTGAAATCTGTCATTCTGTGGCACGGAATGTGTTTGCAACGAACGAGGAGATGAGTGAGAATTTAAGTGACATCAACAATGCTATCACATTATTCACAGCTTCGGCGCCGGCTTCCCCAGACACTCCTCGAAGATTTTGGCAAGGCCGAGGCTTCCTGAATTTTATGCTTATTTGTATGGTGATCGCATTTGTCATATCGTGGGCTTTTCACTTCCATTTTCATTCACCTTAG 681 0.4405 MSSIIQISRVDLEQGSHRSDMSAEASICFSDVEEGSSYSHFYSTNGGSYDEYSFAFVSDPEVIEDLPESGRASSVTECSVEVEIEGGVPEIKVHLDVEERECRICHMGLESESHESGVPIELGCSCKDDLAAAHKLCAETWFKIKGNRTCEICHSVARNVFATNEEMSENLSDINNAITLFTASAPASPDTPRRFWQGRGFLNFMLICMVIAFVISWAFHFHFHSP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2463 226 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Prci13g2463 226 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Prci13g2463 226 SUPERFAMILY RING/U-box 96 157 - -
Prci13g2463 226 CDD RING_CH-C4HC3_MARCH 102 154 - -
Prci13g2463 226 SMART ringv_2 101 154 IPR011016 GO:0008270
Prci13g2463 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 164 IPR013083 -
Prci13g2463 226 PANTHER ZINC FINGER, RING-CH-TYPE 16 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2463 Prci-Chr13 38985159 38988901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2463 47 225 C3H Transcription Factor Family AT5G05830 51.667 1.23e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2463 - - gmx:100808666 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2463 13 38985159 38988901 Prci13g2463 13 38985159 38988901 ECH