Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2445 ATGAACAGGGGAATTGAAGTTTTCTCACCAGCCTCTTACCTTCAAAACTCAAACTGGTTGTTCCAAGAAAGCAAAGGAACAAAATGGACCCCAGAGGAGAATAAGCGGTTTGAGGATGCTTTGGCTTTGTACGACAAAGATACTCCAGATCGTTGGTTGAAAGTTGCAGCTAAGGTTCCAGGGAAGACGGTGGGAGATGTCATTAGGCAGTACAGGCAACTGGAAGAAGATGTTTGTGTCATCGAGGCAGGGTTGATCCCAGTCACTGAGAATGATAACTGTTCTTTCACTTTGGATTGGGTCAATAACCAAAGCTTTGATGATTTCAAGCCGTTCTATACTGTTGGTGAGAAAAGGGGTTCTTCCACTCGACCATCCGAGCAGGAAAGGAAAAAAGGAGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTATTGGGCCTCAAGAAGTATGGTAAAGGGGACTGGAGAAACATATCTCGTAATTTTGTGAACACAAGGACCCCCACTCAGGTTGCTAGTCATGCTCAGAAATATTTCATCCGGCAGCTTACAGGAGGCAAGGACAAGAGGAGATCAAGCATCCATGACATCACAATTGTCAACCTTGAAACCAAGTCATCTCCTTCATCAGACAGTCACGGACCTTCTTCTCCTGATCACTTATTGAATAAGGCTGTGAATCTGCCGAAGAATCCAAATTTCTCTACCATGGTTAAACAGGAGCATGACTCAAAATTACCATGCGAATCCATACCAATGATTTTCAATTCACCAAATGGAAACATGTTCATGCCTCCCTATTTCGGGATTCCTTCAGTTGGATCTGGACCTCAGGAGCAGTGTTTACTCAGAGGTTCTTTCTAA 867 0.4406 MNRGIEVFSPASYLQNSNWLFQESKGTKWTPEENKRFEDALALYDKDTPDRWLKVAAKVPGKTVGDVIRQYRQLEEDVCVIEAGLIPVTENDNCSFTLDWVNNQSFDDFKPFYTVGEKRGSSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVNTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITIVNLETKSSPSSDSHGPSSPDHLLNKAVNLPKNPNFSTMVKQEHDSKLPCESIPMIFNSPNGNMFMPPYFGIPSVGSGPQEQCLLRGSF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2445 288 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Prci13g2445 288 MobiDBLite consensus disorder prediction 122 136 - -
Prci13g2445 288 SMART sant 132 182 IPR001005 -
Prci13g2445 288 SMART sant 25 77 IPR001005 -
Prci13g2445 288 ProSiteProfiles SANT domain profile. 24 78 IPR017884 -
Prci13g2445 288 MobiDBLite consensus disorder prediction 117 136 - -
Prci13g2445 288 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Prci13g2445 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Prci13g2445 288 MobiDBLite consensus disorder prediction 203 218 - -
Prci13g2445 288 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Prci13g2445 288 CDD SANT 135 180 IPR001005 -
Prci13g2445 288 CDD SANT 28 74 IPR001005 -
Prci13g2445 288 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Prci13g2445 288 Pfam Myb-like DNA-binding domain 28 74 IPR001005 -
Prci13g2445 288 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 236 IPR043363 -
Prci13g2445 288 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Prci13g2445 288 Gene3D - 21 88 - -
Prci13g2445 288 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Prci13g2445 288 FunFam transcription factor MYB1R1 134 185 - -
Prci13g2445 288 FunFam Transcription factor SRM1 21 88 - -
Prci13g2445 288 MobiDBLite consensus disorder prediction 203 229 - -
Prci13g2445 288 Gene3D - 134 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2445 Prci-Chr13 38774924 38777284 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci13g2445 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2445 - - qsa:O6P43_026398 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2445 13 38774924 38777284 Prci13g2445 13 38774924 38777284 ECH
Prci13g2445 13 38774924 38777284 Prci2g1864 2 13981509 13983187 ECH
Prci2g1864 2 13981509 13983187 Prci13g2445 13 38774924 38777284 ECH