Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2416 ATGAGATCAGCAACACAAGATTTTCATCCATCTAGCAGAATTGGTGGGGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGAGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACAAAAGAATTTATGACAGAAATCGATACTATATCAAAGATACAGCACCCAAACCTTGTGCGACTTATTGGCTGTTGTATTGAGGGCTATCATAGGATGTTGGTATATGAGTTTCTGGAAAACAATAGCCTTGCAAATTCTTTGCTTGGTCCCAAAAGCAAATGTGTTGCTCTGGATTGGCCAAAGAGGGCTTCTATCTGCTGTGGTACAGCTTCTGGTCTTGAATTTCTTCACGGAGAGGCTCAACCAAACATTGTTCACAGAGATATCAAGGCTAGCAACATACTGCTTGATGGGAACTTTAATCCTAAAATAAGTGATTTTGGCCTCGCAAAGCTTTTTCCTGACAATGTCACTCACGTTAGTACCCGAGTGGCAGGAACTGTGGGATATCTCGCACCAGAATATGCACTTCTAGGACAACTTACAAAGAAGGCAGATGTGTATAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGCAAAAGTAGCAGTAAAGCTGCATTTGGAGAGAATCTCTGGGTTCTGGTGGAATGGGCTTGGAAGCTGAGAGAAGAAGGAAGGCTTCTGGATATTGTAGATCCTGAACTCACCGAATATGATGAGATGCAGGTTTTGCGTTTCATTAAGGTTGCTCTGTTCTGTACCCAAGCAGCAGCACAACACAGACCCACCATGAAGCAAGTAATAAAAATGCTGACCAAGGAAGTGAATTTGAATGAGAAGGCACTGACTGAACCGGGAGTTTATAGGTGGAATGGCTCTAAAGAGTGCGGCAATTCTTCGTTGGAGGAGACATCATCTTCTCAAGCAAACAAGAACAGAAGTTCCAAAAATCCATACATCATCACATCAAGCAACTTTAGTGGTGCTGATTTCGATACAGAGATGCTTCCAAGGTGA 1038 0.4229 MRSATQDFHPSSRIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTKEFMTEIDTISKIQHPNLVRLIGCCIEGYHRMLVYEFLENNSLANSLLGPKSKCVALDWPKRASICCGTASGLEFLHGEAQPNIVHRDIKASNILLDGNFNPKISDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSKAAFGENLWVLVEWAWKLREEGRLLDIVDPELTEYDEMQVLRFIKVALFCTQAAAQHRPTMKQVIKMLTKEVNLNEKALTEPGVYRWNGSKECGNSSLEETSSSQANKNRSSKNPYIITSSNFSGADFDTEMLPR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2416 345 FunFam serine/threonine-protein kinase PBS1-like 1 83 - -
Prci13g2416 345 Gene3D Transferase(Phosphotransferase) domain 1 84 292 - -
Prci13g2416 345 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Prci13g2416 345 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 2 319 - -
Prci13g2416 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Prci13g2416 345 Pfam Protein tyrosine and serine/threonine kinase 12 278 IPR001245 GO:0004672|GO:0006468
Prci13g2416 345 ProSiteProfiles Protein kinase domain profile. 8 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2416 345 MobiDBLite consensus disorder prediction 306 325 - -
Prci13g2416 345 FunFam Putative LRR receptor-like serine/threonine-protein kinase 84 290 - -
Prci13g2416 345 SUPERFAMILY Protein kinase-like (PK-like) 3 278 IPR011009 -
Prci13g2416 345 CDD STKc_IRAK 27 280 - -
Prci13g2416 345 ProSitePatterns Protein kinases ATP-binding region signature. 14 36 IPR017441 GO:0005524
Prci13g2416 345 SMART serkin_6 8 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2416 Prci-Chr13 38497983 38503653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2416 1 296 Receptor kinase-like Gene Family AT1G53420 52.189 1.68e-104 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci13g2416 PK_Tyr_Ser-Thr 9.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2416 - - gmx:100785766 540.421