Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2414 ATGGTTGGCAATTGCTTCGGCGCCTTGAATTGTTGTAAAGGGAAGAATGAACCTGCTGGCCAGTCAGATGAACAAGTGATTGCAACTAAAACTTTTAGTTACAGTTTGATGAGATCAGCAACACAAGATTTTCATCCATCTAGCAGAATTGGTGGGGGAGGTTATGGAGTTGTCTACAAGGGAGTTTTAAGAGATGGTACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAGGGAACAAAAGAATTTATGACAGAAATCGATACTATATCAAAGATACAGCACCCAAACCTTGTGCGACTTATTGGCTGTTGTATTGAGGGCTATCATAGGATGTTGGTATATGAGTTTCTGGAAAACAATAGCCTTGCAAATTCTTTGCTTGGTCCCAAAAGCAAATGTGTTGCTCTGGATTGGCCAAAGAGGGCTTCTATCTGCTGTGGTACAGCTTCTGGTCTTGAATTTCTTCACGGAGAGGCTCAACCAAACATTGTTCACAGAGATATCAAGGCTAGCAACATACTGCTTGATGGGAACTTTAATCCTAAAATAAGTGATTTTGGCCTCGCAAAGCTTTTTCCTGACAATGTCACTCACGTTAGTACCCGAGTGGCAGGAACTGTGGGATATCTCGCACCAGAATATGCACTTCTAGGACAACTTACAAAGAAGGCAGATGTGTATAGTTTTGGGATTCTCATGCTTGAAATAATCAGTGGCAAAAGTAGCAGTAAAGCTGCATTTGGAGAGAATCTCTGGGTTCTGGTGGAATGGGCTTGGAAGCTGAGAGAAGAAGGAAGGCTTCTGGATATTGTAGATCCTGAACTCACCGAATATGATGAGATGCAGGTTTTGCGTTTCATTAAGGTTGCTCTGTTCTGTACCCAAGCAGCAGCACAACACAGACCCACCATGAAGCAAGTAATAAAAATGCTGACCAAGGAAGTGAATTTGAATGAGAAGGCACTGACTGAACCGGGAGTTTATAGGTGGAATGGCTCTAAAGAGTGCGGCAATTCTTCGTTGGAGGAGACATCATCTTCTCAAGCAAACAAGAACAGAAGTTCCAAAAATCCATACATCATCACATCAAGCAACTTTAGTGGTGCTGATTTCGATACAGAGATGCTTCCAAGGTGA 1146 0.4223 MVGNCFGALNCCKGKNEPAGQSDEQVIATKTFSYSLMRSATQDFHPSSRIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTKEFMTEIDTISKIQHPNLVRLIGCCIEGYHRMLVYEFLENNSLANSLLGPKSKCVALDWPKRASICCGTASGLEFLHGEAQPNIVHRDIKASNILLDGNFNPKISDFGLAKLFPDNVTHVSTRVAGTVGYLAPEYALLGQLTKKADVYSFGILMLEIISGKSSSKAAFGENLWVLVEWAWKLREEGRLLDIVDPELTEYDEMQVLRFIKVALFCTQAAAQHRPTMKQVIKMLTKEVNLNEKALTEPGVYRWNGSKECGNSSLEETSSSQANKNRSSKNPYIITSSNFSGADFDTEMLPR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2414 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Prci13g2414 381 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Prci13g2414 381 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 355 - -
Prci13g2414 381 Gene3D Phosphorylase Kinase; domain 1 11 119 - -
Prci13g2414 381 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Prci13g2414 381 CDD STKc_IRAK 63 316 - -
Prci13g2414 381 SMART serkin_6 44 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2414 381 MobiDBLite consensus disorder prediction 342 361 - -
Prci13g2414 381 SUPERFAMILY Protein kinase-like (PK-like) 24 314 IPR011009 -
Prci13g2414 381 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2414 381 FunFam serine/threonine-protein kinase PBS1-like 12 119 - -
Prci13g2414 381 Pfam Protein tyrosine and serine/threonine kinase 48 314 IPR001245 GO:0004672|GO:0006468
Prci13g2414 381 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2414 Prci-Chr13 38497982 38503653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2414 23 329 Receptor kinase-like Gene Family AT1G56120 51.447 1.16e-106 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci13g2414 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2414 - - gmx:100816683 576.244