Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2411 ATGAAAAACAGCAAGGGGAAGGGAGCAGTTGATGATCGAATGGCTGGCAAGCGAAAGGCTGCTGCTCTAAAGGCTGACAAGAGCAGTGCAAAAATGACCAAGAAGGCGAGGAATGCCAAGAAAGATCCCAACAAACCAAAAAGACCGCCCAGTGCTTTTTTTGTCTTCCTTGAGGAATTCAGAAAGGCCTTTAAGGCAGAAAATCCTAATGTGAAGGCTGTATCAGCTGTGGGGAAAGCTGGAGGAGAGAAATGGAAATCTATGACCACTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGTAAAAAAGAAATCTGAGTTTGAAAAACTCATGAAGGCATATAATAAAAAGCAGACAAACTCAGGAGAATCAGATAAGTCGAAGTCTGAAGTGAATGATGAAGAGGATGAAGCCAGTGGAGAGGAAACGCACCAAGAAGAGGAGGATGAAGAAGAGAATGATGAAGACGGGGACGATGAAGAGGATGACTGA 492 0.4431 MKNSKGKGAVDDRMAGKRKAAALKADKSSAKMTKKARNAKKDPNKPKRPPSAFFVFLEEFRKAFKAENPNVKAVSAVGKAGGEKWKSMTTAEKAPYEAKAVKKKSEFEKLMKAYNKKQTNSGESDKSKSEVNDEEDEASGEETHQEEEDEEENDEDGDDEEDD 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2411 163 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 46 115 IPR009071 -
Prci13g2411 163 MobiDBLite consensus disorder prediction 1 47 - -
Prci13g2411 163 Pfam HMG (high mobility group) box 46 115 IPR009071 -
Prci13g2411 163 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 146 IPR031061 -
Prci13g2411 163 MobiDBLite consensus disorder prediction 78 163 - -
Prci13g2411 163 MobiDBLite consensus disorder prediction 96 133 - -
Prci13g2411 163 MobiDBLite consensus disorder prediction 1 50 - -
Prci13g2411 163 SUPERFAMILY HMG-box 39 120 IPR036910 -
Prci13g2411 163 SMART hmgende2 45 116 IPR009071 -
Prci13g2411 163 CDD HMG-box_AtHMGB1-like 47 107 - -
Prci13g2411 163 Gene3D High mobility group box domain 27 131 IPR036910 -
Prci13g2411 163 MobiDBLite consensus disorder prediction 134 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2411 Prci-Chr13 38474504 38477914 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci13g2411 HMG_box 8e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2411 K25507 - cpap:110820929 191.43