Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2408 ATGGGTTTTTCCCAAGAAAGACGAAGAAAACAAAGGCGGAGGTCTTTCAAGGATTCCCTTAAAGCTCTTGAAGCTGATATCCAATTCGCCAATGCCCTAGCTTCTGATTATCCAAGAGACTTTGATGGTGCTTGCCTCCAAATGAGATTATCCTACAGTCCAGCCGCTCAATTTCTCCTTGTACTTTTTCAGTGGACTGATTGCCACCTTGCTGGAGCCTTTGGATTGCTTAGAATTCTGGTATACAAGGCATATGATAATGGGAAGACCACAATGACTGTTTATGAAAGAAAAGCAAGTCTGAAGGAGTTCTATGGTGTAATCTTTCCCTCCTTATTGCAACTACAAAGAGGGATCACTGATGCTGAAGACAGGCGACAAAAAGATTTATGTGCTACAAAGTATAAGTCGGTAGAAGCGATGAACAAACGAGAGATGTCTGAAATTGACATAGAGGGAGAAAATGAATGCGACATTTGCATGGAGATGAACAGAAGGGTTGTGTTGCCTGTCTGCAGCCACTCAATGTGCATGAAATGTTACCGAGACTGGCGAGCACGATCTCAGTCTTGCCCGTTCTGCCGGGGAAATCTGACGAGAGTTAACTCAGGTGACCTTTGGATCTACGTGAGCAGCAATGATATCGAGGACTTAGATTCAATTATCAAGGAGAATGTAAATAGGCTATTTATGTACATTGAGAAGTTGCCGCGCCTAGTTCCAGATCCTAGTTTCGCATCTTATCTTCAGCATTGGTGA 759 0.4321 MGFSQERRRKQRRRSFKDSLKALEADIQFANALASDYPRDFDGACLQMRLSYSPAAQFLLVLFQWTDCHLAGAFGLLRILVYKAYDNGKTTMTVYERKASLKEFYGVIFPSLLQLQRGITDAEDRRQKDLCATKYKSVEAMNKREMSEIDIEGENECDICMEMNRRVVLPVCSHSMCMKCYRDWRARSQSCPFCRGNLTRVNSGDLWIYVSSNDIEDLDSIIKENVNRLFMYIEKLPRLVPDPSFASYLQHW 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2408 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 204 IPR013083 -
Prci13g2408 252 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Prci13g2408 252 PANTHER RING FINGER PROTEIN 41, 151 14 250 - -
Prci13g2408 252 SUPERFAMILY RING/U-box 138 200 - -
Prci13g2408 252 Pfam Zinc finger, C3HC4 type (RING finger) 154 200 - -
Prci13g2408 252 FunFam RING/U-box superfamily protein 138 204 - -
Prci13g2408 252 SMART ring_2 157 194 IPR001841 -
Prci13g2408 252 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2408 Prci-Chr13 38465863 38469068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2408 101 196 C3H Transcription Factor Family AT5G01960 29.412 3.46e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2408 K25840 - zju:107430836 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2408 13 38465863 38469068 Prci13g2408 13 38465863 38469068 ECH