Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2399 ATGAGTACGCTTCAACAAGATGCATTGCTCATGGAGAATGGCCACATCAAGGGTTTGAGCAGGGAGCTGAGGCATGGCAGGACTGCTCATAACATGTCCTCTTCTTCCTTGCGCAAGAAATCCGACTTAACCCTTGTTTCCAAGGTTCAGTGGTGTTTGCTCAGGAATTTGCTCGTCAATTTCCAAGAGGTCATCCTTGGGACCAAGCTGTCGATTCTCTTTCTTGTGATTCCCCTTGCCATCGTCGCCGAAGTCTACAGGTTCGGTCGACCTTGGGTTTTTGCGTTGGCCTTAGTGGGACTTACGCCACTAGCTGAACGCGTCAGCTTCTTGACAGAACAAGTTTCTTACCACACGGGCCCAACAGTTGGAGGACTCTTAAATGCAACATTTGGCAATGTCACAGAACTCATAATAGCAATATTTGCTCTCAGAAATAATAAAATAGCTGTGCTCAAGTATTCTCTCTTGGGTTCAATCCTTTCAAACCTTCTTTTAGTTCTTGGAACCTCCCTCTTCAGTGGTGGAATAGCAAACATTAGAGGAGAACAAAAATTTGATAGGAAACAGGTAGATGTGAACTCACTTATGCTGCTGCTGGCATTTTTGTGCCACTTGCTGCCTTTGCTGTTCAGATATTCTGGTATCTCAGCTGCTCTTGATACAGGCCCATCTCTCCACTTGTCAAGAACTGCAAGTATTGTGATGCTGATAGCATATTTTGCTTACCTTGTCTTTCAACTTTGGACCCATCGCCAGTTATTTCAAGCTGAGGATGAAGAAGATAATGATAATGTTGCAGAAGTAGCTGTGATAGGATTTTGGAGTGGGTTTGCTTGGCTTGCTGGATTGACTGTACTCATTGCCATCTTGTCTCAATTTGTGGTGAACACAATTGAGGGTACTTCAGATTCATGGAGCCTGTCTGTCAGCTTCCTTAGCATCATCTTGTTGCCAATAGTTGGCAATGCAACTGAACATGCAGGGGCAATCATATTTGCTTTGAAGAACAAGCTAGACATCTCATTAGGTGTTGCTTTAGGTTCTGCAACTCAGATTTCCATGTTCGTGGTTCCCCTGTGTGTCGTCATTGCTTGGATAATGGGTATCAGAATGGACCTTGACTTCAATCTCCTTGAGACCGGTTCTCTTGCTTTGGCTATTTTAGTCCCATCTTTCACTTTACAGGATGGGACTTCTAACTACATGAAAGGCCTTGTTCTCCTGCTCTGCTACGTTGTTATTGGGGCATGCTTCTTTGTACAAAGAACACCACCCAACCAGGCTGATGTTCCAAACATGATCCTTAAACCTCCAACTGAAGCAGCTTGA 1332 0.4437 MSTLQQDALLMENGHIKGLSRELRHGRTAHNMSSSSLRKKSDLTLVSKVQWCLLRNLLVNFQEVILGTKLSILFLVIPLAIVAEVYRFGRPWVFALALVGLTPLAERVSFLTEQVSYHTGPTVGGLLNATFGNVTELIIAIFALRNNKIAVLKYSLLGSILSNLLLVLGTSLFSGGIANIRGEQKFDRKQVDVNSLMLLLAFLCHLLPLLFRYSGISAALDTGPSLHLSRTASIVMLIAYFAYLVFQLWTHRQLFQAEDEEDNDNVAEVAVIGFWSGFAWLAGLTVLIAILSQFVVNTIEGTSDSWSLSVSFLSIILLPIVGNATEHAGAIIFALKNKLDISLGVALGSATQISMFVVPLCVVIAWIMGIRMDLDFNLLETGSLALAILVPSFTLQDGTSNYMKGLVLLLCYVVIGACFFVQRTPPNQADVPNMILKPPTEAA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2399 443 FunFam Vacuolar cation/proton exchanger 265 421 - -
Prci13g2399 443 FunFam Vacuolar cation/proton exchanger 121 264 - -
Prci13g2399 443 Pfam Sodium/calcium exchanger protein 277 415 IPR004837 GO:0016020|GO:0055085
Prci13g2399 443 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Prci13g2399 443 NCBIfam calcium/proton exchanger 74 420 IPR004798 GO:0006816|GO:0015369
Prci13g2399 443 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 20 424 IPR004713 GO:0006812|GO:0008324|GO:0016020
Prci13g2399 443 Gene3D - 121 262 IPR044880 -
Prci13g2399 443 Gene3D - 263 420 IPR044880 -
Prci13g2399 443 NCBIfam calcium/proton exchanger 56 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2399 Prci-Chr13 38435839 38440646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2399 12 428 Antiporters AT2G38170 68.618 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2399 K07300 - qsa:O6P43_016607 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2399 13 38435839 38440646 Prci12g0187 12 1458068 1463912 CCT
Prci13g2399 13 38435839 38440646 Prci13g2399 13 38435839 38440646 ECH