Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2391 ATGGAAATGGCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGGAGAGCCGGTGTTGTTCGTGCTTTGACTCAAGATGTGGACGAATTTTACGGACTCTGTGATCCAGAAAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCCCCGGAGCTTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGATTCGCAGGGACTGGCTTTCTCTTGTTGCTGTTCATAGCGATTCATGGCTGCTTTCTGTGGCATTTTATCTTGGGGCCCGTCTCAACCGCAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAACCTATAAAGGACAAGCCAACTGCGGACAGTGGAAGCAAGTCCAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTCAAAAGCAATCCAAAGTTTGCCGATGAGGGTTATGAGGAGGACGAAGATGAGCATAGCGAAACCCTTTGTGGGAGCTGTGGTGGAAATTACAATGCAGATGAATTTTGGATTGGCTGCGATGTCTGTGAGAGGTGGTTCCATGGGAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCCTGCATGAGGAGGGGCAAGCCCTAG 717 0.477 MEMASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMIRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2391 238 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Prci13g2391 238 CDD PHD_AL_plant 185 235 IPR044104 -
Prci13g2391 238 FunFam PHD finger alfin-like protein 178 234 - -
Prci13g2391 238 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Prci13g2391 238 SUPERFAMILY FYVE/PHD zinc finger 174 236 IPR011011 -
Prci13g2391 238 SMART PHD_3 185 233 IPR001965 -
Prci13g2391 238 Pfam PHD-finger 186 234 IPR019787 -
Prci13g2391 238 MobiDBLite consensus disorder prediction 148 165 - -
Prci13g2391 238 PANTHER CPG BINDING PROTEIN 6 234 IPR045104 GO:0006355|GO:0042393
Prci13g2391 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Prci13g2391 238 MobiDBLite consensus disorder prediction 139 176 - -
Prci13g2391 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2391 Prci-Chr13 38339247 38342140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2391 4 232 Alfin-like Transcription Factor Family AT5G05610 80.000 2.39e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Prci13g2391 Alfin 4.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2391 K26274 - qsa:O6P43_026231 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2391 13 38339247 38342140 Prci12g0178 12 1383003 1386282 CCT
Prci12g0240 12 1912982 1913491 Prci13g2391 13 38339247 38342140 CCT