Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2390 ATGGGGAATTGTTGTAGATCTCCGGCTGCTGTTGCCAGGGAGGATGTTAAGTCCGCCAACTTCTCCGGCCACGATCACGGCAAGAGGGACTCCAACGCCGCCAAGAAGAATCGGGTTACGGTTCTTACGGATGTGCCCAAGGAGAACATAGAGGAGAAGTACTTGGTGGATCGGGAGCTTGGTCGAGGCGAGTTTGGTGTGACTTATCTGTGTATTGAGCGGGAAACTAGGGAGTTATTGGCTTGCAAGAGCATTTCCAAGCGGAAACTGAGGACTGCGGTGGACATTGAGGATGTCAGGCGTGAGGTGGCCATTATGAAGCACTTGCCCAAGAGTTCCAGCATTGTGAGCTTGAAGGAAGCGTGTGAGGACGACAATGCCGTGCATTTGGTCATGGAATTGTGCGAGGGTGGTGAGCTGTTCGATCGCATCGTGGCACGTGGGCATTATACTGAGCGAGCTGCTGCTGCGGTCACAAGGACGATTGTAGAAGTTGTACAACTTTGTCACAAGCATGGGGTTATTCATAGGGACTTGAAGCCGGAGAATTTTTTGTTCGCCAATAAGAAAGAGAATTCACCTTTGAAGGCTATCGATTTCGGCCTGTCTATATTCTTCAAGCCAGGTGAGAGATTCTCAGAAATTGTTGGAAGTCCATATTATATGGCTCCAGAGGTGCTCAAGCGGAACTATGGGCCAGAAATAGACATCTGGAGTGCGGGAGTAATTCTTTATATCTTGCTTTGTGGTGTTCCCCCATTTTGGGCAGAATCTGAGCAGGGGGTTGCACAGGCGATTCTTCGAGGTCTTATAGATTTCAAGCGGGAACCTTGGCCCAGTATTTCAGAGAGTGCCAAAAGTCTTGTTAGGCAAATGTTAGAACCAGATCCCAAGCTTCGATTAACTGCCAAGCAGGTGCTCGAACATCCTTGGCTTCAAAATGCTAAGAAGGCTCCTAACATTCCCCTTGGTGATGTAGTCAAGTCCAGGCTTAAGCAGTTTTCGATGATGAACAGATTCAAACGAAAAGCCCTGAGGGTCATTGCTGATTTCTTATCCACTGAAGAAGTGGAGGACATCAAAGAAATGTTCAAGAAGATGGACAGTGACAATGATGGCATTGTTTCTGTTGAAGATCTAAAAGCGGGTTTTCAAAATTTTGGATCTCAACTTGCTGAGTCTGAAGTTCAGAGTTTGATTGAAGCTGTAAATACTAATGGGAAGGGAACACTTGACTACGGAGAATTTGTTGCTGTTTCCCTGCATTTAAAAAGGATGGCTAATGATGAGCATCTTCACAAAGCCTTCTCCTATTTTGACAAAGATGGAAATGGCTATATTGAACCAGACGAGCTACGGGATGCCTTGACGGAGGATGGTGCAGATGATTGTACAGTTGTAGCAAATGATATTTTCCAGGAAGTAGACACAGACAAGGATGGCCGTATCAGCTATGATGAATTTGTATCTATGATGAAAACTGGAACAGATTGGAGGAAAGCCTCTAGGCATTATTCACGAGGGAGATTCAACAGCTTGAGCTTGAAGTTGGTGAAAGATGGTTCTGTAAACTTAGGGACTGAGTAG 1587 0.46 MGNCCRSPAAVAREDVKSANFSGHDHGKRDSNAAKKNRVTVLTDVPKENIEEKYLVDRELGRGEFGVTYLCIERETRELLACKSISKRKLRTAVDIEDVRREVAIMKHLPKSSSIVSLKEACEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGERFSEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAESEQGVAQAILRGLIDFKREPWPSISESAKSLVRQMLEPDPKLRLTAKQVLEHPWLQNAKKAPNIPLGDVVKSRLKQFSMMNRFKRKALRVIADFLSTEEVEDIKEMFKKMDSDNDGIVSVEDLKAGFQNFGSQLAESEVQSLIEAVNTNGKGTLDYGEFVAVSLHLKRMANDEHLHKAFSYFDKDGNGYIEPDELRDALTEDGADDCTVVANDIFQEVDTDKDGRISYDEFVSMMKTGTDWRKASRHYSRGRFNSLSLKLVKDGSVNLGTE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2390 528 SMART serkin_6 54 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2390 528 SUPERFAMILY Protein kinase-like (PK-like) 40 337 IPR011009 -
Prci13g2390 528 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Prci13g2390 528 PANTHER SERINE/THREONINE-PROTEIN KINASE 46 488 - -
Prci13g2390 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Prci13g2390 528 SUPERFAMILY EF-hand 341 517 IPR011992 -
Prci13g2390 528 Pfam Protein kinase domain 56 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2390 528 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Prci13g2390 528 Gene3D - 321 496 - -
Prci13g2390 528 CDD EFh 431 493 IPR002048 GO:0005509
Prci13g2390 528 MobiDBLite consensus disorder prediction 18 35 - -
Prci13g2390 528 Pfam EF-hand domain pair 358 418 IPR002048 GO:0005509
Prci13g2390 528 Pfam EF-hand domain pair 430 493 IPR002048 GO:0005509
Prci13g2390 528 SMART efh_1 467 495 IPR002048 GO:0005509
Prci13g2390 528 SMART efh_1 359 387 IPR002048 GO:0005509
Prci13g2390 528 SMART efh_1 431 459 IPR002048 GO:0005509
Prci13g2390 528 SMART efh_1 395 423 IPR002048 GO:0005509
Prci13g2390 528 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
Prci13g2390 528 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Prci13g2390 528 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Prci13g2390 528 ProSiteProfiles Protein kinase domain profile. 54 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2390 528 Gene3D Transferase(Phosphotransferase) domain 1 140 320 - -
Prci13g2390 528 CDD STKc_CAMK 53 311 - -
Prci13g2390 528 MobiDBLite consensus disorder prediction 16 35 - -
Prci13g2390 528 FunFam calcium-dependent protein kinase 13 140 320 - -
Prci13g2390 528 Gene3D Phosphorylase Kinase; domain 1 55 139 - -
Prci13g2390 528 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Prci13g2390 528 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Prci13g2390 528 FunFam Calcium-dependent protein kinase 7 321 496 - -
Prci13g2390 528 FunFam Calcium-dependent protein kinase 1 56 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2390 Prci-Chr13 38296093 38301200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2390 1 413 EF-hand Containing Proteins AT3G51850 86.957 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Prci13g2390 Pkinase 3.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2390 K13412 - qsa:O6P43_026234 1003.82