Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2360 ATGTCTACAACTTCTTTGATTAGCCAGCTGCATGATGGTACTGATAGGTGGAAAATTATCGTTCGAATCCACAGGAAGTGGAATGTTTTCCATAAATCAGCACCCAATGAACTATTCTGCATAACCATGATCTTAGTTGACGTTGAGGGGAACAAGATTCAAGTAAGTGTCTTGAACAAGAGCCTTCATGATCAGTTTAGATCTTTCCCTTTGGAAGGACATGTTTACTTTATTGCCAACTTTGTGCTATCTAAAAATGAAAACCAATTTAGAGCAACCACTCATCCTTTTAAGATAGCATTCAGCCAGCAAACATATATAAGGGAAGATGCAGCGTCAATTCCTGACTTATTTTCATTCTTTCCAATATCCAAGATCAAGAAAGTCACTGACGAAAAAATGATTGACCATCTATTTGATGTCATAGGTTACTTGAAGAAGATAAGTAATCTTGAGGAGTATCGCAAGGATAATGAGACTAAGCACAAACTCCGCATGTTGTTGGTGGGCAAGGATGATAATGATGTCGAGTTAGTTCTATATGATGAATGCTCTACTAATGCATACATGGCACAACTTGAACATAAAGAAGGCCCTATTGTGGTTGTTATCAATCTGTGCAGAATAGGCTTCACTGAAGATGGGAGACCTCAAATATCCAGCTCTTTTAATGCTACTAGGGTTCTTTATAATTTGGCCATAAAAGAGGTGAAGGAGATGATGGATAGTGTGAAGGAGATGACATCACCAATGATATGTACCTCTGCTCAGAGCATCAGCCAACCATCAACTCAAACTTTAGCATCCAATATGATGAGAAACACAAGGAAAATAAATATTGCCCAAATTCATGACCAACCAGCTGAATCAAGTTTCTTGATAAGCTGTGTGATTATCAAGCTGGACACTCGAAATGGCTGGAATTATGATGGGTGTTCAAAATGTGCATCTAAGCCTAAGCCTCAGAATGGTTCTTTGTATTGCCCATTGTGTAAAAAGAAACCTGCATCTATTGAGACAAAGCTGAAATTACACTATACAGTGGAAGATGAAACTGGTAAGGTTAATGTTGTTTTCTGGGACAAGTTGGCTATACAACTATTAGGACAAACAGCAACAGAGCTTAAGGTCATTCTTCATGAGGATAAGCGATCCTATGACTTCCCATATGAGTTGGATCAGCTGGTTGGCAGGAAAATGCTATTAAAGTTGAAACTTAATGGCTACAATAAAGAATATCCATCTTCAAGTATCAGTGTACTTCAGTATACTGAATGTGGCGATTTAATGAATCAATTCATTGAAGCAGTTGATGTAGAAGAACAATCTGATGGAGGTATTGGTGAAGGTATCAAAGAAGTTTCTACTGAGGAAGATGTAGTTAAGGGAGAAAAGACAAACATGGAAAACCCTATTGTTGTTGACAATGATGCCAAAGATTCACCAACTGACTTCCATAGTAATGATATTAATGCTGGGCTTGATGAGATGGATGTGTCTCAACTGATTGCTGCAAAAACTGTCCCTTCCACCACCTACATGAAGGGAAAGAGGAGAAATGCTATGAAGAGATCTGCTGTTGTTGATGAGATTGAAAAGTCTTCTCAAGTGCATGCATCTTTTGCCTCGCTGCCAAAGCCAATTAAAGCTATCAAGCAAGAAAAGTAG 1668 0.3837 MSTTSLISQLHDGTDRWKIIVRIHRKWNVFHKSAPNELFCITMILVDVEGNKIQVSVLNKSLHDQFRSFPLEGHVYFIANFVLSKNENQFRATTHPFKIAFSQQTYIREDAASIPDLFSFFPISKIKKVTDEKMIDHLFDVIGYLKKISNLEEYRKDNETKHKLRMLLVGKDDNDVELVLYDECSTNAYMAQLEHKEGPIVVVINLCRIGFTEDGRPQISSSFNATRVLYNLAIKEVKEMMDSVKEMTSPMICTSAQSISQPSTQTLASNMMRNTRKINIAQIHDQPAESSFLISCVIIKLDTRNGWNYDGCSKCASKPKPQNGSLYCPLCKKKPASIETKLKLHYTVEDETGKVNVVFWDKLAIQLLGQTATELKVILHEDKRSYDFPYELDQLVGRKMLLKLKLNGYNKEYPSSSISVLQYTECGDLMNQFIEAVDVEEQSDGGIGEGIKEVSTEEDVVKGEKTNMENPIVVDNDAKDSPTDFHSNDINAGLDEMDVSQLIAAKTVPSTTYMKGKRRNAMKRSAVVDEIEKSSQVHASFASLPKPIKAIKQEK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2360 555 SUPERFAMILY Nucleic acid-binding proteins 118 245 IPR012340 -
Prci13g2360 555 PANTHER OS03G0429900 PROTEIN 5 409 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci13g2360 555 CDD RPA1_DBD_A_like 18 105 - -
Prci13g2360 555 Pfam Replication factor-A C terminal domain 293 412 IPR013955 -
Prci13g2360 555 Pfam Domain of unknown function DUF223 43 110 IPR003871 -
Prci13g2360 555 SUPERFAMILY Nucleic acid-binding proteins 6 109 IPR012340 -
Prci13g2360 555 Gene3D - 256 435 IPR012340 -
Prci13g2360 555 SUPERFAMILY Nucleic acid-binding proteins 280 435 IPR012340 -
Prci13g2360 555 Gene3D - 115 251 IPR012340 -
Prci13g2360 555 Gene3D - 3 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2360 Prci-Chr13 38042451 38045073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2360 17 412 Core DNA Replication Machinery Family AT5G08020 21.739 6.41e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2360 - - pcin:129290097 1108.2