Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2353 ATGGAAGGAAGAAACGAAGGCTCGGAATGCTCTAAAACAAGCCCTTCTGTTTATAATTGCAACGAATTGGAAGAAGCGTGGGAGACCAAGAGCAAGACCGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGGTAAGAAAAATATGAACAACAATGGAGGAAGCTCAAGCAATAGCACGGTCGAAGAGACAGAGAAGAAGCCATCAGTGAGGCCTTATGTGAGATCCAAGATGCCAAGACTTCGATGGACTCCTGATCTTCATCTTCGCTTTGTTCATGCCGTTCAAAGGCTTGGGGGAGAGGAGAGAGCAACACCCAAGCTGGTTCTCCAATTAATGAACATCAAAGGCTTGAGTATTGCGCATGTTAAGAGCCACTTACAGATGTATAGGAGCAAGAAGGTAGACGATCCAAGCCAAGTATTGGCTGATCATAGACACCTTGTAGAAAGTGGGGACAGAAATATCTACAACCTCAGCCAAATTCCCATGCTTCAAGGTTATAATCCCTGGCAAACTTCAACCTTGAGATATGGATGTGGGGATGCTTTCTTGGGTGTGTATGACAAAATGGTTCACAGCCCGTTCACGGGTCGGAGTCTGATAGATCATGAATCCAGGTCGTCTGGGTTTCACAGCATTTTCCAGGCGGACCCTTCAAATTTATCATCATCATCGTTATCAACAAATAAAATCTATGAGCCAAAAGAAAATCAAGTTCTCTCATTTGGTGATGGCCATGAACACATCTACAATCGAACCAGTTTGAGCCAGCAGAATATCACTGATCTTAACTCCGCGAACCATATGGGACCGACAAGAGCAGGAGAACAGCTTCTTCTTCCAATGATGAAGGATCAGGATCAAACAAAGACGCTGAAACGAAAGGCTTATCGTGAGCATATGGATCATCCCCTTGATTTGGATCTATCGCTGAAGTTAAATTCCAGGGTTGATGTTGATAGTGCAAAGAAGAATCATCAAGCAAGGAATCATTTGGAAGAGAACGATGAAATTGATCATAGCAATCTCTCACTGTCTTTGTACTCTCAAATTTCATGGTCCGACGAAGGAGAACACTGTAACAAGGAGAAAGCAAGGAGGGAAATGGCCAGTACTCTGGATCTGACTATATGA 1137 0.4345 MEGRNEGSECSKTSPSVYNCNELEEAWETKSKTEEEEGEEEEEEGKKNMNNNGGSSSNSTVEETEKKPSVRPYVRSKMPRLRWTPDLHLRFVHAVQRLGGEERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDDPSQVLADHRHLVESGDRNIYNLSQIPMLQGYNPWQTSTLRYGCGDAFLGVYDKMVHSPFTGRSLIDHESRSSGFHSIFQADPSNLSSSSLSTNKIYEPKENQVLSFGDGHEHIYNRTSLSQQNITDLNSANHMGPTRAGEQLLLPMMKDQDQTKTLKRKAYREHMDHPLDLDLSLKLNSRVDVDSAKKNHQARNHLEENDEIDHSNLSLSLYSQISWSDEGEHCNKEKARREMASTLDLTI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2353 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 134 IPR006447 GO:0003677
Prci13g2353 378 Pfam Myb-like DNA-binding domain 81 131 IPR001005 -
Prci13g2353 378 MobiDBLite consensus disorder prediction 49 63 - -
Prci13g2353 378 SUPERFAMILY Homeodomain-like 77 133 IPR009057 -
Prci13g2353 378 FunFam Myb family transcription factor 77 135 - -
Prci13g2353 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 56 252 IPR046955 GO:0003700
Prci13g2353 378 Gene3D - 78 135 - -
Prci13g2353 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 135 IPR017930 -
Prci13g2353 378 MobiDBLite consensus disorder prediction 1 73 - -
Prci13g2353 378 Coils Coil 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2353 Prci-Chr13 38007707 38009869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2353 70 163 G2-like Transcription Factor Family AT2G42660 57.798 9.89e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Prci13g2353 Myb_DNA-binding 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2353 - - pcin:129291537 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2353 13 38007707 38009869 Prci13g2353 13 38007707 38009869 ECH