Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2341 ATGATGGCAGACTTGCAGAGAAGCTCGAAGGCTCGTATCTTAAGTCCGAGTCTTCTCTTACTGTTGTGTCTTAGCCTCACAACAAGACCTTCCATGGCTGCTGCCACAGATGATCAGAAAGAAACACGAATATCAGTGAAAGTGGGCGTCATTCTTGATCTGACTTCAGCACTTGGTCTCTTGGCTAACAACAGCATCACCCTCGCCGTCGAAGATATCTATTCCGTTCATAACGATACAGCGACCAAGATCGACCTTATAGTCTGCAATATTTCTCAGAACGACGTCGTCAGTGCAGCAGATCAAGCTCTTGATCTAATAGAGAAAGTGAAAGTGCAAGCCATCTTGGGGCCCCAAAATTCAGAGCAAGCAAGGTTTATAGTGAAACTTGGTGAGAAACATGAAGTGCCTGTTATTTGGTTTCCCATAACTGGGCCGTCTCTTTCACCACCTCCATCCCCATCCTCCATCTACTCCGATCACGGCCTTAATTGCTTGCAGTTCCGAGCCATAGCCGACGTTATTAAAGCTCTTGGGTGGCAATCGATCGTCCCCATTTATGAAGAGACTGAATATGGCAGTCACCTTATTCCATGCCTCACCAACGTCTTCAAAGAAATGGGCATACGAATGGCTAACGTCACTTCCATTCGTCCAATTACATCAGATTTAGATGGAACAATCAACAACACTCTTGACGACTTAAAAAGCATGCGATCGCGTATATATCTTGTCCATATGAACATGGATCTTGGGACAACATTTATTAGGTCTGCACAAATAAAAGACATGATGGGTGAAGGATATGCTTGGATACTTACCCAAGAGCTATCTTCTTTGACAGATCCTAAAGTTAATATTCAGAGAAAATTGTATCATGACCTATCTTGGCAAAATTATACGTATTTTACGGATCCAGTTCGTTTGAAGCGCTTCATGCAAGGTGCATTAGGAGTGAGGCCAATGGATTCCAACAAAACAGATTTTCGTAGGCAGAGGGAGGGGAATTTCAGTGACAGGTTCAAAAGAACCCTAACTATCTATGGGTGGTGGGCTTATCACACAATCGAAGCATTGGCTAAGGCAGTAGAGAAGACAGGCCCAGGCAAAGGCTCAATACTTCGTAAAGAAATTCTGGCTACTAACTTCACAGGCTTGTCAGGGGTAAATTTTAGTTTTAGCACTAAAGGACAGCTGGATCAATCGGTGCTTGAAGTATACAACGTGATTGGAGACAGAGAAAGGATCATCGGAGCTTGGAGCCCTGAAACGGGCCTTGTTCAGAATTACAGTAAAGTTGGTGATGATGAGACATCAGGTGAATACAAACTATTGGATCCACTGTGGCCGGGTGACACGATGGATAAACCACCCAAGTTGAGAATTGGGGTCCCAAGAACAAATTCTTTTCCTGAATTAGTGAATGTAGATAATTCAAGTAATAAGACCAAGTTTGATGGCTTTGCTATTAATGTGTTCTTAAAAGCGGTCGATATTTTGCCATTTCCGTTAAAGAATTACGAGTTTGTTCCCCTGCCGATCGACGAAAGCAGCAATACTACAATGCCCTACTACGATTATATTCTCTGCAGCGAAACGGAAGACAAGGAGCTTGATGCCATAATTGGAGACGTCACAATTGTAGCAAATCGCACAAGGTGTGTTGATTTCACGTTGCCGTACTTAGATTCAAGTGTAGTAATGGTGGTAAGGGTGAACAATGCCACCACAGGTAGGGGGATCCTCTTCAAACCTTTCCATTGGTCATTGTGGTTAATCCTTGGTGGGATTTTTGTGGGTGCAACGATTATGATAATTATGTTAGATGGAAACAAAACCGAGGAATTTCGCTTCAACCCCTTTCTTGTTTACAAAATGGATACTATGGAGAGTTTTGCAAGCAACACTGCAGGGTGGTTGGTGGTACTGACGACATTTCTGTTCATCCTAGTATTGCAAGTTTACACTGCGAACCTAACTTCAATTTTAACAGAAGGAAAAGAGAGAGTGCCTTCATTCAAGGACGAGAACGAGATTAAGAGTAGCAATCTGATGGTGGGATATCAGAGAGGGTCGTGGGTGAGAGGGCTTCTGATTGAACAAGTAGGATTCAACGAGTCTCAGTTGAAGGATTTAGGAGGTCGCGAAGAGTATGATAAAGCATTGTCAGATGGAACCCGAAAGGGAGGAGTGGATGCTATTTTTGATGAAACTCCTTATCTCACAATCTTCCTCTCCCGTTACAAATCTCGCTTTATGATGACAGGACCAATCTACAAAACTGGTGGATTTGCCTTTGCATTTCCAAAGAAGTTAGGCTTGGTGTTACATTTTTCGAATGCAATCTTAAATGTGACACAAGATGTGGAGCCATTTCGTGTGCTGGTGGCCAAGAGCTCCTTACCCACCTCTATTGAAGATTTGGAATTCGAAGATCAAAATGAAATCGAGACGTCAAGTTTGAGTATAACCAACTTTGGAGGGCTTTATCCTGTCCTCTTATCTGTTGCAGCTCTTTTATTAGGCCTTTCCATTTTGAATCCAAGAGTGATTGAATGGTTGCGCAAGAAGATGGTTTCAATTTTATGTTCGATCAGAAAGGCTTAA 2607 0.4277 MMADLQRSSKARILSPSLLLLLCLSLTTRPSMAAATDDQKETRISVKVGVILDLTSALGLLANNSITLAVEDIYSVHNDTATKIDLIVCNISQNDVVSAADQALDLIEKVKVQAILGPQNSEQARFIVKLGEKHEVPVIWFPITGPSLSPPPSPSSIYSDHGLNCLQFRAIADVIKALGWQSIVPIYEETEYGSHLIPCLTNVFKEMGIRMANVTSIRPITSDLDGTINNTLDDLKSMRSRIYLVHMNMDLGTTFIRSAQIKDMMGEGYAWILTQELSSLTDPKVNIQRKLYHDLSWQNYTYFTDPVRLKRFMQGALGVRPMDSNKTDFRRQREGNFSDRFKRTLTIYGWWAYHTIEALAKAVEKTGPGKGSILRKEILATNFTGLSGVNFSFSTKGQLDQSVLEVYNVIGDRERIIGAWSPETGLVQNYSKVGDDETSGEYKLLDPLWPGDTMDKPPKLRIGVPRTNSFPELVNVDNSSNKTKFDGFAINVFLKAVDILPFPLKNYEFVPLPIDESSNTTMPYYDYILCSETEDKELDAIIGDVTIVANRTRCVDFTLPYLDSSVVMVVRVNNATTGRGILFKPFHWSLWLILGGIFVGATIMIIMLDGNKTEEFRFNPFLVYKMDTMESFASNTAGWLVVLTTFLFILVLQVYTANLTSILTEGKERVPSFKDENEIKSSNLMVGYQRGSWVRGLLIEQVGFNESQLKDLGGREEYDKALSDGTRKGGVDAIFDETPYLTIFLSRYKSRFMMTGPIYKTGGFAFAFPKKLGLVLHFSNAILNVTQDVEPFRVLVAKSSLPTSIEDLEFEDQNEIETSSLSITNFGGLYPVLLSVAALLLGLSILNPRVIEWLRKKMVSILCSIRKA 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2341 868 Gene3D - 33 167 - -
Prci13g2341 868 Gene3D - 168 364 - -
Prci13g2341 868 SMART GluR_14 461 791 IPR001320 GO:0015276|GO:0016020
Prci13g2341 868 Coils Coil 865 868 - -
Prci13g2341 868 Pfam Receptor family ligand binding region 63 411 IPR001828 -
Prci13g2341 868 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 845 IPR015683 -
Prci13g2341 868 SUPERFAMILY Periplasmic binding protein-like I 46 451 IPR028082 -
Prci13g2341 868 Gene3D - 456 582 - -
Prci13g2341 868 Pfam Bacterial extracellular solute-binding proteins, family 3 533 788 IPR001638 -
Prci13g2341 868 SUPERFAMILY Periplasmic binding protein-like II 456 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2341 Prci-Chr13 37785913 37794416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2341 46 790 Ion Channels AT2G29120 34.422 2.43e-114 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2341 K05387 - qsu:111985484 503.442