Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2340 ATGAAGAAAAGGGTGAGAGATTGTGTCATGTTTGTGAGCTTTTTATGCCTAATTACCCTAACCTTCACTGAGTCTGCAACTGTAAGAGGAAGTGGTGGAAGCAGAAGACGACGATCCCCTGTAGATATATCAGTAGGAGTGATTCTGGACTTGAATTCATCACTTGGTCACATGGCTCTCAACTGCACCAACTTCGGACTCCAAGATTTCTATTCCACAAATGATTCTTATACCACCAACCTCCGACTTCACTTCAAGGATTCTGGAAACGATGTCCTCACCGCAGCTTCTGCAGCTAGGGATCTAATAAACAAGGAAAAGGTGCATGCAATCCTTGGACCTCAAAGCTCTGAGCAGGCAAGGTTTGTTGTAGAACTTGGTTACAAGTATCATGTTCCAGTCATCTGGTTTTCTCCATCTGGTCCATCTCTTTTGCCACCTCGTTCCCGATTCTTCATCCACTCTGACTTCGCCAGCAGAAGCCATTGCTTTCAGTTCAGAGCTATAGCAGCCATTATTAAAGCTTATAATTGGCAATCTGTGATCCCCATTTATGAAGAGCCAGAATTCGGCTACGACCTCATTCCATGTCTCACTTATGCCTTGGAAGAAATGGACACTCGAGTTCCTTACATAAGTTCCATAAAGCAAAATTCCAATGATACTGAAATCAAAGATGAGCTTGACATGCTCAAAGACAAGAGAACACACGTGTTTCTCGTCCACATGACCGTGGAGCTATGGTCAAGACTCGTGAAAATTGCAAAAAATGCAGGCTTGATGAGTAAAGGATATGCTTGGATACTTACCCAAGGGCTATCTTCTGTGATGGATCCCAAAACTAAAGGTATTCAACAGAAAGGCTACATGGATGGTGCATTGGGTGTGGGGCCATCGGTATTTTCCAACAAAAATGACATCATAAGGAAGCGCATTTCCATAGCAACAAGATTAATGATTTACAGTAAAACTCTCTCTCTATATGGCTTGTGGGCTTATGACACTATTACAGCATTGGCCAACGCAGTAGAGAACGCCGGCTTTGTGAATTCTAGTGAAAGCAGAGTTAATCTTGTAGATGCAATTTTGGGTACCCATTTTGCTGGCCTGTCAGGGAGTTTCAGTTTAAGGGAAGGAGAGCTAGAACCATCCGAAGTTGTAGTCTATAATGTGAGAGGACTAAACAATACTATCATTGGATATTGGAGCCCCGGAACAGGACTCCAAAATCACAGTGTAAATGGTGAGCAAATTGGTAAATACAAACTAATGGATCCGATATGGTGGCCGGGTAACACAACGGAGAGACCACCAAAGTTGAAAATTGGAGTCCCAAGGACACATTTTATTGAATTTGCTAATGTTACTGATGTGTCTTTTGATGGCTTTGCTATTGATGTGTTCAAAAAAGTGGTCGATGTTTTGCCATTTCCTTTACCTTATGAGTTTGTAAACATCAATGGGGAGCAAACTCCCTCAAGCTATGATGATCTTCTTTGCAGTATCACAGACAAGAATGTTGATGTTGATGTCATAATCGGAGACATTACAATTGTAGCGAGTCGCACAAATTGTGTTGACTTCACATTGCCGTATTTAGATTCAAGCGTGTCCATGGTGGTGAAGGTGAGGTCCGACACCAAAAGTCGGTGGATCCTCTTCAAACCTTTTGATTGGTTACTTTGGTTGATTCTTGGTGCGATTTTTGTGGGTGCAACCGTTATTGTAATTATATTAGAAAGAAGAAACAAGGCTGCCAATGGAAGCAAATTCCAACACTTTGCCTGCAATCCCTTCCTCATTTACATGAGCGATATTGGGTCTTTGAAAAGCAAGACATCTAAATGGGTGGTGATAGTGATCACCTTTTTTCTGGGGCTAGCGTTGCAAGTTTACACAGCAAATTTGACATCAATTTTTACAGAGAGAACAACGGCAAAACCTTCTCCATGGAGGGATGTGCAAGAGATTAAAAGGAACAATGGGTCAGTGGGATGTCAAAAGGATTCCTGGGTCAAAGGCCTTCTCATTCACCAACTAGGACTCAAGGAAGATCAGATAAAGGATTATGCAAGTCCTCAAGAGTACAACCATGCTTTATCAAATGGAACCAAAAAAGGAGGTGTGGATGCTATTTTTGATGAAACTCCGTATCTCATGCTCTTCCTTTCCAATTGCTCTTCTTGCAAGATGACAGGACCAATCTACAAAACTGGTGGATTTGCCTTTGCATTCCCAAAGAGTTCTACTTTGGTCTCGAATTTCTCAACTGCAATATTGAATGTGACTCAAAATGTGAAGACATTTCGTGACATGAAGAAGAAAATATTATTACCTGTCACCATTGACAAATCTGAATACAAAAGTGAAGTGGAGAGGCGGAGTTTGACGATAGATGACTTTGGAGGCTTTTTCCCGATAGTATTGTTTGTATTGGTTCTCTTTTTCGGCCTTGCATTTCGTAGAGCTCTTGAAACTAAAGATTCACCTAATCCCTCACCGGCTTTATAA 2511 0.4158 MKKRVRDCVMFVSFLCLITLTFTESATVRGSGGSRRRRSPVDISVGVILDLNSSLGHMALNCTNFGLQDFYSTNDSYTTNLRLHFKDSGNDVLTAASAARDLINKEKVHAILGPQSSEQARFVVELGYKYHVPVIWFSPSGPSLLPPRSRFFIHSDFASRSHCFQFRAIAAIIKAYNWQSVIPIYEEPEFGYDLIPCLTYALEEMDTRVPYISSIKQNSNDTEIKDELDMLKDKRTHVFLVHMTVELWSRLVKIAKNAGLMSKGYAWILTQGLSSVMDPKTKGIQQKGYMDGALGVGPSVFSNKNDIIRKRISIATRLMIYSKTLSLYGLWAYDTITALANAVENAGFVNSSESRVNLVDAILGTHFAGLSGSFSLREGELEPSEVVVYNVRGLNNTIIGYWSPGTGLQNHSVNGEQIGKYKLMDPIWWPGNTTERPPKLKIGVPRTHFIEFANVTDVSFDGFAIDVFKKVVDVLPFPLPYEFVNINGEQTPSSYDDLLCSITDKNVDVDVIIGDITIVASRTNCVDFTLPYLDSSVSMVVKVRSDTKSRWILFKPFDWLLWLILGAIFVGATVIVIILERRNKAANGSKFQHFACNPFLIYMSDIGSLKSKTSKWVVIVITFFLGLALQVYTANLTSIFTERTTAKPSPWRDVQEIKRNNGSVGCQKDSWVKGLLIHQLGLKEDQIKDYASPQEYNHALSNGTKKGGVDAIFDETPYLMLFLSNCSSCKMTGPIYKTGGFAFAFPKSSTLVSNFSTAILNVTQNVKTFRDMKKKILLPVTIDKSEYKSEVERRSLTIDDFGGFFPIVLFVLVLFFGLAFRRALETKDSPNPSPAL 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2340 836 Pfam Bacterial extracellular solute-binding proteins, family 3 457 765 IPR001638 -
Prci13g2340 836 PIRSF IGluLR_plant 6 832 IPR017103 -
Prci13g2340 836 Gene3D - 436 550 - -
Prci13g2340 836 Gene3D - 164 328 - -
Prci13g2340 836 SMART GluR_14 441 779 IPR001320 GO:0015276|GO:0016020
Prci13g2340 836 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 816 IPR015683 -
Prci13g2340 836 Gene3D - 551 671 - -
Prci13g2340 836 SUPERFAMILY Periplasmic binding protein-like I 42 431 IPR028082 -
Prci13g2340 836 Pfam Receptor family ligand binding region 67 391 IPR001828 -
Prci13g2340 836 SUPERFAMILY Periplasmic binding protein-like II 436 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2340 Prci-Chr13 37761118 37769783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2340 11 764 Ion Channels AT2G29120 33.953 3.22e-124 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2340 K05387 - qsu:111985481 572.778