Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2339 ATGGCAGACTGGCAGAGAAGCTGGAGAGCTCGTCTCTTAAGTCTGAGTCTTCTGTTACTGTTTTGCATTAACCTCACAACAAGACCTTCCACGGCTGCCGCCACAGATGATCAGAAAGAAACACGAATATCAGTGAAAGTGGGTGTCATTCTTGATCTCACTTCAGAACTTGGTCTCTTGGCTCACAACAGCATCACCCTTGCCGTTGAAGATACAGCAACCAAGATCGACCTTATAGTCTGCAATATTTCTCAGAACGACGTCGTCACTGCGGCAGAACAAGCTCTCGATCTGATACAGAAAGTGAAAGTGCAAGCCATCTTGGGGCCCCAAAATTCAGAGCAAGCAAGGTTTATAGTGAAACTTGGTAAGAAACATAACGTGCCTGTTATTTGGTTTCCCATAACTGGTCCGTCTCTCTTGCCACCTCCATCGCCATCCTCCATCCACTCCCATCAAGGTCTTAATTGCTTTCAGTTCCATGCCATAGCTTCCATTATTAAAGCTCTTGGGTGGCAATCAATCGTCCCCATTTATGAACAGACTGAATATGGCAGTCACCTTATTCCATGCCTCACCAACGTCTTCAAAGAAATGGGCATACGAATGTTTAACGTCACTTCCATTCGTCCAATTATTTCATCAGATTTAGATGGAAAAATTAACAGAACTCTTTATCAAGAAAAAATTAACAGCACTCTTGACAAGTTAAACAACATGCGAACACATGTATTTCTTGTCCATATGAGCATGGATCTTGGGACAACATTTATTAGGTCTGCACAAAGAAAAGAGATGATGGGTGAAGGATACGCATGGATACTCACGCAAGAGCTATCTTCTTTGACAGAGCCTCTGGTTAAGGTTACGAGAACATTGATTCATAATGCAGGCCTACCTTCGGAATATTATACGAATTTTACGGATTCAATTCGTTTGAAGCGCTTCATGCAAGGTGCGTTGGGAGTGAAGCCAATGGATTCCAATAAATCAAAAGAGCGTAGGGAGAAAGAGAAGAATTTCAGGGAGAGGTTCAAAAGCACCCTAACTATCTATGGGTGGTGGGCTTATCACACAATCGAGGCATTGGCTAAGGCAGTACAGAAGACAAGCACAGACAAAGGCTCAAAACTTCGCGATAAAATTTTGGCTACTAACTTCAAAGGCTTGTCTGGGATCAATTTTAGTTTTAGAAAAGAACAGCTAGATCAATCGGTATTTGAAGTATACAATGTGATTGGAGACAGAGAAAGGATTATCGGAGCTTGGAGCCCTGAAACAGGACTTGTTCAAGATTACGGTAAAGTTGGTGATGAGACATCTGGTGAATACCGACTAAAGGATGCGCTGTGGCCGGGTGACACGATGGATAAGCCACCTAAGCTGAGAATTGGAGTCCCAAGAACAAATTCTTTTCCTGAATTAGTGAATGTAGGTAATTCAAGTAATACGACCAAGTTTGATGGCTTTGCTATTAATGTGTTCTTAAAAGCGGTCGATGTTTTGCCATTTCCGTTAAACAATTATGAGTTCGTTCCCCTGCCGAACGAAATCAGCAATGCTAACATGACCTACGATAATATTCTCTACAACCAAACGAAAATCGAGGAGCTTGACGCTATAATCGGAGACATCACAATTGTAGCAAGTCGCACAAAATGTGTTGATTTCACGTTGCCGTACTTGGATTCAAGTGTAGCCATGCTGGTAAAGGTGAAGAATGTCGCCACAAGTAGGGGGATCCTCTTCAAACCTTTCCATTGGTCACTATGGTTAATTCTTGGTGGGATTTTTGTGGGTGCAACTATTATCATAATTGTATTAGAAAGAAACAAAACAAAGGAATTTCGCTTCAACCCCTTTCTTGTTTACAAGATCGATGTTATGGAGAGTTTTGCAAGCAACGCTGCGGGGTGGATGGTGATACTGACGTCATTCCTGTTCATCTTAGTATTGCAAGTTTACACAGCGAATTTAACTTCAATTTTAACAGAAGGAAAACTGAAAGAGCCTTCATTTAAGGACGAAAAAGAGATTATTAAGAGGAGCAATCTGAGGGTGGGATATCAGAGAGGGTCGTGGGTGAGAGAGCTTCTGATTGAGCAAATAGGATTCAAGGAGTTTCAGTTAAAGGGTTTACGAAGCCGTGAAGAGTACAGTGAATCATTGTGGAAAGGAACCGAGAAAGGAGGAGTGGATGCTATTTTTGACGAAACTCCTTATCTCACGCTCTTCCTCTCCAAATATAAATCTCGTTTTATGATGATAGGATCAATCTACAAAACTGGTGGATTTGCCTTTGCATTCCCGAAGAAATCGGGCTTGGTCTCGCATTTTTCGAATGCAATCTTAAATGTGACTCAAGATGTGGAGCCATTTCGTGTCCTGGTGGCCAAGAGCTTCTTGCCCACCTCCATTGAAGATTTGGAATTTCAAGACCAAGGTGATATAGAGACGACAAGTTTGAGCATAGCCAACTTTGGAGGGCTTTATCCTGTCCTAGTATCTGTTGCTGCTCTCTTATTGGGCCTTTCCATTCTGAATCCTTCTGTGATTAAGTGGTTTCGTCGTGAGAAGCTGCTTTCAGTTTTAAGTTCGCTAAACAAAAAGAAGGAACACAATTAA 2625 0.4198 MADWQRSWRARLLSLSLLLLFCINLTTRPSTAAATDDQKETRISVKVGVILDLTSELGLLAHNSITLAVEDTATKIDLIVCNISQNDVVTAAEQALDLIQKVKVQAILGPQNSEQARFIVKLGKKHNVPVIWFPITGPSLLPPPSPSSIHSHQGLNCFQFHAIASIIKALGWQSIVPIYEQTEYGSHLIPCLTNVFKEMGIRMFNVTSIRPIISSDLDGKINRTLYQEKINSTLDKLNNMRTHVFLVHMSMDLGTTFIRSAQRKEMMGEGYAWILTQELSSLTEPLVKVTRTLIHNAGLPSEYYTNFTDSIRLKRFMQGALGVKPMDSNKSKERREKEKNFRERFKSTLTIYGWWAYHTIEALAKAVQKTSTDKGSKLRDKILATNFKGLSGINFSFRKEQLDQSVFEVYNVIGDRERIIGAWSPETGLVQDYGKVGDETSGEYRLKDALWPGDTMDKPPKLRIGVPRTNSFPELVNVGNSSNTTKFDGFAINVFLKAVDVLPFPLNNYEFVPLPNEISNANMTYDNILYNQTKIEELDAIIGDITIVASRTKCVDFTLPYLDSSVAMLVKVKNVATSRGILFKPFHWSLWLILGGIFVGATIIIIVLERNKTKEFRFNPFLVYKIDVMESFASNAAGWMVILTSFLFILVLQVYTANLTSILTEGKLKEPSFKDEKEIIKRSNLRVGYQRGSWVRELLIEQIGFKEFQLKGLRSREEYSESLWKGTEKGGVDAIFDETPYLTLFLSKYKSRFMMIGSIYKTGGFAFAFPKKSGLVSHFSNAILNVTQDVEPFRVLVAKSFLPTSIEDLEFQDQGDIETTSLSIANFGGLYPVLVSVAALLLGLSILNPSVIKWFRREKLLSVLSSLNKKKEHN 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2339 874 Gene3D - 31 158 - -
Prci13g2339 874 Pfam Bacterial extracellular solute-binding proteins, family 3 524 789 IPR001638 -
Prci13g2339 874 SUPERFAMILY Periplasmic binding protein-like I 45 452 IPR028082 -
Prci13g2339 874 Pfam Receptor family ligand binding region 74 414 IPR001828 -
Prci13g2339 874 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 45 846 IPR015683 -
Prci13g2339 874 SUPERFAMILY Periplasmic binding protein-like II 458 789 - -
Prci13g2339 874 Gene3D - 159 357 - -
Prci13g2339 874 Gene3D - 582 700 - -
Prci13g2339 874 SMART GluR_14 463 792 IPR001320 GO:0015276|GO:0016020
Prci13g2339 874 Gene3D - 458 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2339 Prci-Chr13 37743357 37749315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2339 45 791 Ion Channels AT2G29120 33.580 5.69e-112 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2339 K05387 - qsu:111985484 506.908