Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2338 ATGAAGACAGGGGCAAGAGATTATTGCATCATGTTTGTGGGCTTATTATGCCTAATTACCCTAACCATAACTGAGTCTGCAACTGAAGGAGGAAGTGGTGGAAGAAGAATAAGAAGACGATCCCCTGTAGATGTATCAGTAGGAGTGATTCTGGACTTGAATTCATCACTTGGTCACATGGCTCTTAACTGCACCAACTTCGGACTCCAAGATTTCTATTCCACAAATGATCCTTATACCACCAAGCTCCGACTTCTTTTCAGGGATTCTAGAAACGACGTCCTCACCGCAGCTTCTGTAGCTAGGGATCTAATAATTAAGGAAAAGGTGCAAGCAATCCTAGGACCTCAAAACTCAGAGCAAGCAAGGTTTGTTGTAGAACTTGGTTTCAAGTATCATGTTCCTGTGATCTGGTTTCCTCCATCTGGTCCATCTCTTTTGCCGCCTCGCTCCCGATTCTTCATTCACTCCTACCTCGTCAGAAGCCATTGCTTTCAGTTCAGAGCCATAGCAGCCATTATCGAAGCTTATAATTGGCAGTCTGTGATCCCCATTTATGAAGAGCCAGAATTCGGCTACGACCTCATTCCATGTCTCACTTATGCTATGGAAGAAATGGACACTCGAGTGCCTTACATAAGTGCCATAAATCAAAATTTCAACGAGACTCAAGTCGAAAACGAGCTTAAAAAGTTCAAAGACAAGCGAACATATGTGTTTCTTGTCCACATGACCGTGGAGCTATGGTCAAGACTCGTGAAAGTTGCATACAAAGCAGGGATGATGAGTAAAGGATATGCTTGGATACTTACCCAAGGGTTATCTTCTGTGATGGATCCCGAAGCTAAAGATATTAAAGTGAAAGGCTACATGGATGGTGCATTGGGTGTGGGGCCATCGGTAGTTTCCAACAAAAATGACATAATAAGTAAGCGCAGGTACGTAGCGAGAAGATTACTGAATTACAACAAAACTCTCTCTCTCTATGGCTTGTGGGCTTATGACACTGTCACAGCATTGGCCAACGCAGTGGAGAATTCCGGCTTAGTGAATTATAATGAAAGCAGAGTTGACCTTGTAGATGAAGATCTAGGAATGCGTAATGAAACAGGCCAAAAACTTCGCAGAGCAATTATGCATACTAATTTCCCAGGCCTATCGGGGAATTTCAGTTTATGGCAAGGACAGCTAAAACCATCAACAGTTGTAGTGTACAATGTGAAAGGACTAACCGATACTATCATTGGAAGTTGGAGCCCCAGAACAGGACTTGCTCGCTACAAACTAATGGATCCGATCAGATGGCCTGGTAACACAACAGACAGACCACCAAAGTTGAAAATCGGAGTCCCAAAGACACATTTTACTGAATTTGTTGATGTTAGTGGAGAATGGCCGAATATGTCTTTTGATGGCTTTGCTATTCATGTGTTCAAGAAAGTGGTTGATGTTTTGCCATTTCCTTTAAATTATGAGTTTGTGCCAGTCAACATCAACGCAGAGAGGACTCCATCAAGCTACGATGATCTTCTCTGCAGTATCACAGACAAGAATGTTGATGTTGATGTTATAATTGGAGATGTTACAATTGTAGCGAATCGCACAAACTGTGTTGACTTCACATTGCCGTATCTAGATTCAAGCGTGTCCATGGTGGTAAAGGTGAGGTCCGACACCAAAAGTCGGTGGATCCTCTTCAAACCTTTTGATTGGTTACTTTGGTTAATTCTTGGTGTGATTTTTGTGGGCGCAACTGTGATTGTAATTATATTAGAAAAAAAAACCAAGGCTGATCCTGAAAGCCAATTCCAGAACTTTGTCCGCAATCCCTTCCTCATTTACATGAGCGATATTGGTTCTCTGAAAAGTGGGACGTCTAAATGGGTGGTGATAGTGATCACGTTTCTGTTGGGGCTAGCGTTGCAAGTTTACACAGCAAATTTGACATCAATTTTAACAGAGCGGACAACGGCAAAACCTTCTCCATGGAGGGACGTGCAAGAGATTAAAAGGAACAATCTGTCAGTGGGATATCAAAAGGATTCCTGGGTGAAAGGCCTTCTCATTCACCAGCTAGGACTCAATGAAGAACAGTTAAAGCCTTATGCAAGCCCTGACGAGTACAATCATGCATTGTCAACCAAAAAAGATGGCGTGGATGTTATTTTTGATGAAATTCCTTATCTCACGCTCTTCCTTTCCAGTTGCCCTTCTTGCAAGATGACAGGACCAATCTACAAAAGTGGTGGATTTTCCTTTGCATTCCCAAAGAATTCTACCTTGGTCTTAAATTTCTCAGCTGCAATATTGAATGTAACTCAAAATGTGACGACATTTCGTAACATGAAGAAGGAAATATTGTTACCCGTCACCATTGATAGATCTGAATACAAAAGTGATGTTGAGATGCGAAGTTTGAAGATAGATGACTTCGGAGGCCTTTTCCCGATAGCATTATTTGTTTTAGTTCTCTTCTTAAGCCTTTCAATTCTTAGAGTTCTTAAAGTTCCACCAATCACTCCCTGGCTGCATAAGAAATTGGTTCCATTTTCAAGTGCGTAG 2562 0.4188 MKTGARDYCIMFVGLLCLITLTITESATEGGSGGRRIRRRSPVDVSVGVILDLNSSLGHMALNCTNFGLQDFYSTNDPYTTKLRLLFRDSRNDVLTAASVARDLIIKEKVQAILGPQNSEQARFVVELGFKYHVPVIWFPPSGPSLLPPRSRFFIHSYLVRSHCFQFRAIAAIIEAYNWQSVIPIYEEPEFGYDLIPCLTYAMEEMDTRVPYISAINQNFNETQVENELKKFKDKRTYVFLVHMTVELWSRLVKVAYKAGMMSKGYAWILTQGLSSVMDPEAKDIKVKGYMDGALGVGPSVVSNKNDIISKRRYVARRLLNYNKTLSLYGLWAYDTVTALANAVENSGLVNYNESRVDLVDEDLGMRNETGQKLRRAIMHTNFPGLSGNFSLWQGQLKPSTVVVYNVKGLTDTIIGSWSPRTGLARYKLMDPIRWPGNTTDRPPKLKIGVPKTHFTEFVDVSGEWPNMSFDGFAIHVFKKVVDVLPFPLNYEFVPVNINAERTPSSYDDLLCSITDKNVDVDVIIGDVTIVANRTNCVDFTLPYLDSSVSMVVKVRSDTKSRWILFKPFDWLLWLILGVIFVGATVIVIILEKKTKADPESQFQNFVRNPFLIYMSDIGSLKSGTSKWVVIVITFLLGLALQVYTANLTSILTERTTAKPSPWRDVQEIKRNNLSVGYQKDSWVKGLLIHQLGLNEEQLKPYASPDEYNHALSTKKDGVDVIFDEIPYLTLFLSSCPSCKMTGPIYKSGGFSFAFPKNSTLVLNFSAAILNVTQNVTTFRNMKKEILLPVTIDRSEYKSDVEMRSLKIDDFGGLFPIALFVLVLFLSLSILRVLKVPPITPWLHKKLVPFSSA 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2338 853 PIRSF IGluLR_plant 7 836 IPR017103 -
Prci13g2338 853 Gene3D - 443 562 - -
Prci13g2338 853 SMART GluR_14 447 784 IPR001320 GO:0015276|GO:0016020
Prci13g2338 853 Pfam Bacterial extracellular solute-binding proteins, family 3 467 777 IPR001638 -
Prci13g2338 853 Gene3D - 563 682 - -
Prci13g2338 853 SUPERFAMILY Periplasmic binding protein-like II 442 775 - -
Prci13g2338 853 Pfam Receptor family ligand binding region 71 408 IPR001828 -
Prci13g2338 853 SUPERFAMILY Periplasmic binding protein-like I 44 437 IPR028082 -
Prci13g2338 853 Gene3D - 81 399 - -
Prci13g2338 853 Gene3D - 162 424 - -
Prci13g2338 853 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 45 829 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2338 Prci-Chr13 37733512 37738305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2338 44 828 Ion Channels AT2G29100 33.738 7.42e-122 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2338 K05387 - qsu:111985481 564.688