Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2331 ATGACGACTGGTACCCTTTGCGGGAACAAGACATCGCGGAAGAGACGAAGAAGTGGGAGTGACTCTGTCATAGACACTCTTGAGAAGTGGAAGAAGTACAACAGTGACGTTGAGTTTGTCAAAAATGGAGCAAAGAAAGCGAGTCAGAGAGTTCCAGCGAAAGGCTCGAGAAAGGGATGCATGAGAGGCAAAGGTGGGCCTCAAAACTCAGATTGCAACTACAGAGGAGTGAGACAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGCGAACCCATTACTGGAAATCACAATAATGTGGGAAACAAGAAACCAAATCGGTTATGGCTTGGCACCTTCTCTACTGCACTTGAAGCTGCCCTTGCTTATGATGAAGCAGCCAGAGCCATGTACGGTCCCTGTGCTCGCCTGAACTTTCCTGAGTATAATATGGAAGGAGGAGCAGAAGAAGAAGAACCCACATGCTCTAATGAGGAAACAGAGAAGAAACATGATATTGTTCTGGTGAAGAGTGAAGAAGAAACAGAGGAGGAATGGAATCCAAGAGCTAGTTGTGAGGATTCTAGTGTCATTGGAAGTGAAGCTTCCTTTGAGAAGAAGCAAATGGAGGAAATGACGTCCGAGATTCTGGGATTTTGTGCATCTGACCACTCTCAAAACGAGGAATATAAATCTTCTATAGAGAGAAAATTTGGAGATGAGGGTTTCAGCATTCCTGGCAATGGAACTCCGTGTTTGAAGAAAAAGACATGGATGAGTGGCAGAGTGGTCATTTGCCTGTGTATCTGA 789 0.4537 MTTGTLCGNKTSRKRRRSGSDSVIDTLEKWKKYNSDVEFVKNGAKKASQRVPAKGSRKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPITGNHNNVGNKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPEYNMEGGAEEEEPTCSNEETEKKHDIVLVKSEEETEEEWNPRASCEDSSVIGSEASFEKKQMEEMTSEILGFCASDHSQNEEYKSSIERKFGDEGFSIPGNGTPCLKKKTWMSGRVVICLCI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2331 262 MobiDBLite consensus disorder prediction 1 21 - -
Prci13g2331 262 Pfam AP2 domain 72 132 IPR001471 GO:0003700|GO:0006355
Prci13g2331 262 Gene3D AP2/ERF domain 73 141 IPR036955 GO:0003700|GO:0006355
Prci13g2331 262 MobiDBLite consensus disorder prediction 44 68 - -
Prci13g2331 262 SMART rav1_2 73 146 IPR001471 GO:0003700|GO:0006355
Prci13g2331 262 CDD AP2 72 141 IPR001471 GO:0003700|GO:0006355
Prci13g2331 262 FunFam Ethylene-responsive transcription factor 2 72 141 - -
Prci13g2331 262 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Prci13g2331 262 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Prci13g2331 262 ProSiteProfiles AP2/ERF domain profile. 73 140 IPR001471 GO:0003700|GO:0006355
Prci13g2331 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 205 - -
Prci13g2331 262 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2331 Prci-Chr13 37679018 37681111 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2331 8 141 AP2-EREBP Transcription Factor Family AT2G40340 55.474 1.53e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci13g2331 AP2 8.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2331 - - pcin:129291313 513.457