Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2235 ATGTCGATTCCTCCTCAAATCTTCCCTCCTCGTAAACGACGACCCTCGGCGGGGTCGTTTATCTCTCCCAAAATCACAGAGCTCGACCTCCTTCACTCTCTGCTTCACCTGACCCATGAGATTTCCTTTCTCAAACCCATCCGATTCCTTCACAGACGCAATTTCTCTTCCATCATTCGCAAAACCAATCTCCTCGCTGTTCTCTTTGAAGAGTTGATTAGAAGTTCGGTTTCTCTTTCCTTTCAATCTGCCATCCTTTGTTTCGAAGAAATGTACATAGTTCTACAGAGAATCAAGACCTTAATTGAAGATTGCTCCAACGGAAGCAAGATGGCGCTGTTGATGCAGAACGAATTTATTGCCGATAATTTTCACAAACTCACTGCGGATTTATCGACGCTGTTGGATATATTCCCGGTGGCGAAACTTGAAATAAGCGACGACGTTCGAGAGCTGACCCTGATCAGAAAACAATGCACTGAATCAAAGGCTTTTGTGGATCCGAAAGACAACGAGCTCAGGCACGAGGTTGTCACGATGCTTGATCGCATTAAGCGAGAGATCGTCCCCGATGATTCCAAGCTTGCGGATATCTTCGAGAGGTTGGAAATCCGAGATTCTTCGAGTTGCAGAGCGGAGATTGAGAGTTTAGAGGAGGAGATTCAGAATCGAAACGATGAGCAATCCAAATCCGAGCTCGTCGCTTTGATCGGACTCGTCCGTTACGCGAAATGCGTTCTTTTCGGAGCTTCCACGCCGTCATCTTCTTCCTCAGATGTACAGCGGCGTAAACAGCCGTCAGAGATTATTGTTCCGGCGGATTTCAGGTGTCCGATTACCCTTGAGCTCATGCGCGACCCGGTGGTCGTGGCAACAGGACAGACGTACGATCGTGAGTCTATCAAACTGTGGTTCGAATCAGGACACAACACGTGTCCCAAGACTGGTCAAACTATGTCCCACACGGACCATCCCAACCGCGCATTGAAGAATCTAATAGCGATGTGGTGCCGCGAGGAAAAGATACTGTTTGAAACCGCGGGCAGTAACGACAAACCTCACGGCGTTATCATCAACAAAGCCGCCTTAGAAGCTACCAGAATGACGGCGTCATTCTTAGTCAACAAATTGTCTCTTTCTCCGTCCATGGAAGCCGCAAACGCCGTCGTTTATGAGCTTCGTTTTCTCTCTAAAACAGATTCCGATAGCCGAGCCTGCATAGCCGAAGCTGGAGCCATCCCTCTCTTAGTTCGCTACTTGAGCTTCAGCGTCGGCTCAAAGAATCCACACCTGCAAGTTAACGCCGTCACGGTCACGACCATCCTCAACCTGTCCATCCTCGAGGCGAACAAAACGAGGATAATGGAGACTGACGGAGCGTTATACGGCGTTATCGAAGTCCTTCGCTCAGGAACCACATGGGAGGCGAAGGCCAACGCAGCCGCCACAATATTCAGCTTGTCTGGGGTTCCCTCGTACAGAAAAAGACTGGGAAGGAAGACACGTGTCACACGGGGGTTGATTGACTTGGCAAGGTGCGGGCCCACAAGTGCCAAGAAGGATGCCCTGGTGGCAATTTTGACTCTGGCGGCGGATAGAGAGACGGTGGCGAGGCAGGTAGAAGCTGGGGGTGGTGGAGATGACAGCGAGGTGATGGACGGGTTACCCGAAGAGGCGGTGACAATTCTTGAGATGGTTGTGACGGGTGGGCTGGTGGCTGTCGCCGCCGCGTTCGGCAGCATTAAGAAATTGGGGGTTATATTGAGGGAAGGTTCCGATAGGGCAAGAGAAAGTGCGGCGGCGACACTCGCCACAATGTGTCGTAGGGGATCGGATATTGTGGCGGAACTGGCCTCCTTGCCGGGAATTGAAAGAGTAACATGGGAATTGATGGCCATTGGGACTATAAGAGGGAAAAGAAAAGCAGCCACGTTGTTGAGGACTCTCCGGCGATGGGCTGCCGGAATGGACGGTGCAGGATTAACGGCCATCACTTCATCAACAACAATGGTTTCAACGGCCATCACTTCGTCAACACAATGGTTTCAACTCAATAGCACAAAGAGTATATGTCTAGTTGTTTTTTCCCCTGTTTTTTTAATTTATAATCTGTAA 2115 0.5007 MSIPPQIFPPRKRRPSAGSFISPKITELDLLHSLLHLTHEISFLKPIRFLHRRNFSSIIRKTNLLAVLFEELIRSSVSLSFQSAILCFEEMYIVLQRIKTLIEDCSNGSKMALLMQNEFIADNFHKLTADLSTLLDIFPVAKLEISDDVRELXTLIRKQCTESKAFVDPKDNELRHEVVTMLDRIKREIVPDDSKLADIFERLEIRDSSSCRAEIESLEEEIQNRNDEQSKSELVALIGLVRYAKCVLFGASTPSSSSSDVQRRKQPSEIIVPADFRCPITLELMRDPVVVATGQTYDRESIKLWFESGHNTCPKTGQTMSHTDLXPNRALKNLIAMWCREEKILFETAGSNDKPHGVIINKAALEATRMTASFLVNKLSLSPSMEAANAVVYELRFLSKTDSDSRACIAEAGAIPLLVRYLSFSVGSKNPHLQVNAVTVTTILNLSILEANKTRIMETDGALYGVIEVLRSGTTWEAKANAAATIFSLSGVPSYRKRLGRKTRVTRGLIDLARCGPTSAKKDALVAILTLAADRETVARQVEAGGGGDDSEVMDGLPEEAVTILEMVVKXGGLVAVAAAFGSIKKLGVILREGSDRARESAAATLATMCRKXGSDIVAELASLPGIERVTWELMAIGTIRGKRKAATLLRTLRRWAAGMDGAGLTAITSSTTMVSTAITSSTQWFQLNSTKSICLVVFSPVFLIYNL 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2235 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 345 IPR013083 -
Prci13g2235 708 Gene3D - 346 701 IPR011989 -
Prci13g2235 708 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Prci13g2235 708 FunFam RING-type E3 ubiquitin transferase 270 345 - -
Prci13g2235 708 PANTHER U BOX DOMAIN-CONTAINING 53 653 - -
Prci13g2235 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 461 IPR000225 GO:0005515
Prci13g2235 708 SUPERFAMILY ARM repeat 374 653 IPR016024 -
Prci13g2235 708 Pfam U-box domain 272 343 IPR003613 GO:0004842|GO:0016567
Prci13g2235 708 Coils Coil 208 235 - -
Prci13g2235 708 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Prci13g2235 708 SUPERFAMILY RING/U-box 272 344 - -
Prci13g2235 708 CDD RING-Ubox_PUB 273 325 IPR045210 -
Prci13g2235 708 CDD MLKL_NTD 51 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2235 Prci-Chr13 36989363 36991706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2235 9 659 U-box Gene Family AT5G01830 59.389 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2235 - - qsa:O6P43_026334 917.531