Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2224 ATGCATCGACGTCTTCTGGACGCCGGGCTAAGTGTGTCTCCGGCATATGGGAATAAGACCCGCGAATCGTTCGTGGGCGATGTAAACTTCGACGCGAACATGGTGATCATATTGGCGGCTCTGTTGTGCGCATTAATATGCGCGCTTGGATTGAACTCGATAGTGCGATGCGTGTTGCGTTGTGGCCGAAGATTTTCCACGGGGACCACAGAACAAACAACTGCTAGGCTTGTCTCAACGGGCCTGAAGAAACGTCATCTGAGTCAGATTCCGGTGAAAGTTTACGGGCCCGCGGCGAATATTCCGGCGACGGAGTGCCCGATATGCCTCGGGGAGTTCGAGAAAGGAGATAAGGTGCGAATGCTGCCAAAATGCAATCACGGGTTCCATGTTAGTTGCATAGACACATGGCTTCTGTCACATTCTTCTTGCCCCAACTGTCGCCATTCGCTGCTTGAGAAACCCACAAATTCAAAATCCAATTCCAATTCTAATAGGAGGAGTGAAGGAGGAGAAGTCGCCGGAGCTCGGGATCCGGCAGATGGATCCGGCAACATGCAAGTCCCCGTTGCGGTGGTCGACGAGCAGGCAAGTTGA 597 0.5276 MHRRLLDAGLSVSPAYGNKTRESFVGDVNFDANMVIILAALLCALICALGLNSIVRCVLRCGRRFSTGTTEQTTARLVSTGLKKRHLSQIPVKVYGPAANIPATECPICLGEFEKGDKVRMLPKCNHGFHVSCIDTWLLSHSSCPNCRHSLLEKPTNSKSNSNSNRRSEGGEVAGARDPADGSGNMQVPVAVVDEQAS 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2224 198 SMART ring_2 106 147 IPR001841 -
Prci13g2224 198 MobiDBLite consensus disorder prediction 154 169 - -
Prci13g2224 198 Pfam Ring finger domain 105 148 IPR001841 -
Prci13g2224 198 SUPERFAMILY RING/U-box 87 156 - -
Prci13g2224 198 SMART FANCL_C_2 102 155 - -
Prci13g2224 198 CDD RING-H2_EL5-like 105 148 - -
Prci13g2224 198 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Prci13g2224 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Prci13g2224 198 MobiDBLite consensus disorder prediction 154 198 - -
Prci13g2224 198 PANTHER RING-H2 FINGER PROTEIN ATL78 24 166 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2224 Prci-Chr13 36863847 36865373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2224 4 156 C3H Transcription Factor Family AT3G10910 57.669 3.61e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2224 K19040 - zju:107431091 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2224 13 36863847 36865373 Prci13g2224 13 36863847 36865373 ECH