Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2198 ATGGCTTCCTTGCTTCGTCCTCCTGCTTATGCCCTCCAACATAATCTAACCACAATCCCCTTCTCTTCTCCGAAACCCACTTCACCCAATAATGTTTCTTTCTTAACACACCGTTTCAAGAGTAACCCTGTAAAGTGTAAAGCTTTTCTGGACAACATTGCCAACGATTTGTTGGAGAACACTATATACCTCGATCAATTCCCTGTTCTTCGATCAGGAATAGTTCAATTTCAGAGATTAACTGAAGATTTATCCGATTTCCAGAAGTGGTGTTTCCTTGTTTTTGCAGGACTGACATGGATTTATTTGACTGCAAGGCCAGGTGTTCTTATAGGCGCCATTGATGCCTACCTTCTGGCTCCTCTGCAGCTCGGCTTGGACAATTTAACGGGAAAAAGGAATCTCAGAAGGACTGATTTTATGATTGGAGATAAGATTGGGGAAGGTTCATTTGGTGTTGTTTATTCTGGTGTCGTGGTTCCGAAGAATGGTTTTGTTGAAGAGAATGTACAGAAGAGGGGAAGAGGAAAGACAGCAATAAATTTGAATGTGAAACCAAAGGATAAAGTTATTCTCAAAAAGGGAGACCGCACTCTTGCTGATTACATCAAAGGTCGTAACTTTCCTTCAAACTTAGAGTCTGTCATGTTTGGAAGTGTCTTGCAAGGTGTAGACCCTTCTAAACGAAATGCATTGATCATCAAACAAATAATGCGCCAGATTATCACATGTCTTAAGAAAATTCACGACACAGGCATTGTTCACAGAGATGTCAAGCCTGCCAACTTGGTAGTCACTAGACGGGGGCAGATTAAACTCATAGATTTTGGTGCAGCAGCAGACCTTCGAATTGGAAAGAATTATGTACCCAACATTACCTTGCTGGATCCTGACTACTGCCCCCCAGAATTATATGTACTCCCGGAAGAAACACCGAGTCCTCCTCCAGAGCCAATTGCAGCTTTCCTTTCACCAATCTTGTGGCAGCTGAATAGTCCTGATCTGTTTGATACGTACTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCATCTTTAAGGTCTCCAGCTGCCTTGAAGAACTTCAATTTGGAGATCAAAACATGTCAATATGATTTGATCAAATGGAGAGAATTTACTCGCCTTAGGCCCGACTTCCAAATTCTTGACTGTGACTCAGGTCGAGGGTGGGACTTAGCAACAAAGCTTATTTGTGAGAGAGGCCCCTTTAGAAGAGGACGCTTATCTGCTGCAGATGCTTTGAGGCATCCTTATTTTCTTCTGGCTGGTGATCAAGCTGCCGCAGTCCTTTCAAAATTGAGCTTAAGCAGAAAGTGA 1338 0.4283 MASLLRPPAYALQHNLTTIPFSSPKPTSPNNVSFLTHRFKSNPVKCKAFLDNIANDLLENTIYLDQFPVLRSGIVQFQRLTEDLSDFQKWCFLVFAGLTWIYLTARPGVLIGAIDAYLLAPLQLGLDNLTGKRNLRRTDFMIGDKIGEGSFGVVYSGVVVPKNGFVEENVQKRGRGKTAINLNVKPKDKVILKKGDRTLADYIKGRNFPSNLESVMFGSVLQGVDPSKRNALIIKQIMRQIITCLKKIHDTGIVHRDVKPANLVVTRRGQIKLIDFGAAADLRIGKNYVPNITLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDTYSAGIVLLQMAIPSLRSPAALKNFNLEIKTCQYDLIKWREFTRLRPDFQILDCDSGRGWDLATKLICERGPFRRGRLSAADALRHPYFLLAGDQAAAVLSKLSLSRK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2198 445 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 194 445 - -
Prci13g2198 445 Pfam Protein kinase domain 233 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2198 445 SMART serkin_6 140 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2198 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Prci13g2198 445 SUPERFAMILY Protein kinase-like (PK-like) 137 427 IPR011009 -
Prci13g2198 445 Gene3D Transferase(Phosphotransferase) domain 1 225 429 - -
Prci13g2198 445 ProSiteProfiles Protein kinase domain profile. 140 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2198 Prci-Chr13 36609429 36612593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2198 140 282 MAP Kinase Kinase Kinase AT3G13530 28.662 1.30e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Prci13g2198 Pkinase 5.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2198 - - tcc:18602197 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2198 13 36609429 36612593 Prci13g2198 13 36609429 36612593 ECH