Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2197 ATGGCTTCCTTGCTTCGTCCTCCTGCTTATGCCCTCCAACATAATCTAACCACAATCCCCTTCTCTTCTCCGAAACCCACTTCACCCAATAATGTTTCTTTCTTAACACACCGTTTCAAGAGTAACCCTGTAAAGTGTAAAGCTTTTCTGGACAACATTGCCAACGATTTGTTGGAGAACACTATATACCTCGATCAATTCCCTGTTCTTCGATCAGGAATAGTTCAATTTCAGAGATTAACTGAAGATTTATCCGATTTCCAGAAGTGGTGTTTCCTTGTTTTTGCAGGACTGACATGGATTTATTTGACTGCAAGGCCAGGTGTTCTTATAGGCGCCATTGATGCCTACCTTCTGGCTCCTCTGCAGCTCGGCTTGGACAATTTAACGGGAAAAAGGAATCTCAGAAGGACTGATTTTATGATTGGAGATAAGATTGGGGAAGGTTCATTTGGTGTTGTTTATTCTGGTGTCGTGGTTCCGAAGAATGGTTTTGTTGAAGAGAATGTACAGAAGAGGGGAAGAGGAAAGACAGCAATAAATTTGAATGTGAAACCAAAGGATAAAGTTATTCTCAAAAAGGGAGACCGCACTCTTGCTGATTACATCAAAGGTCGTAACTTTCCTTCAAACTTAGAGTCTGTCATGTTTGGAAGTGTCTTGCAAGGCATTGTTCACAGAGATGTCAAGCCTGCCAACTTGGTAGTCACTAGACGGGGGCAGATTAAACTCATAGATTTTGGTGCAGCAGCAGACCTTCGAATTGGAAAGAATTATGTACCCAACATTACCTTGCTGGATCCTGACTACTGCCCCCCAGAATTATATGTACTCCCGGAAGAAACACCGAGTCCTCCTCCAGAGCCAATTGCAGCTTTCCTTTCACCAATCTTGTGGCAGCTGAATAGTCCTGATCTGTTTGATACGTACTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCATCTTTAAGGTCTCCAGCTGCCTTGAAGAACTTCAATTTGGAGATCAAAACATGTCAATATGATTTGATCAAATGGAGAGAATTTACTCGCCTTAGGCCCGACTTCCAAATTCTTGACTGTGACTCAGGTCGAGGGTGGGACTTAGCAACAAAGCTTATTTGTGAGAGAGGCCCCTTTAGAAGAGGACGCTTATCTGCTGCAGATGCTTTGAGGCATCCTTATTTTCTTCTGGCTGGTGATCAAGCTGCCGCAGTCCTTTCAAAATTGAGCTTAAGCAGAAAGTGA 1251 0.4325 MASLLRPPAYALQHNLTTIPFSSPKPTSPNNVSFLTHRFKSNPVKCKAFLDNIANDLLENTIYLDQFPVLRSGIVQFQRLTEDLSDFQKWCFLVFAGLTWIYLTARPGVLIGAIDAYLLAPLQLGLDNLTGKRNLRRTDFMIGDKIGEGSFGVVYSGVVVPKNGFVEENVQKRGRGKTAINLNVKPKDKVILKKGDRTLADYIKGRNFPSNLESVMFGSVLQGIVHRDVKPANLVVTRRGQIKLIDFGAAADLRIGKNYVPNITLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDTYSAGIVLLQMAIPSLRSPAALKNFNLEIKTCQYDLIKWREFTRLRPDFQILDCDSGRGWDLATKLICERGPFRRGRLSAADALRHPYFLLAGDQAAAVLSKLSLSRK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2197 416 Gene3D Transferase(Phosphotransferase) domain 1 219 400 - -
Prci13g2197 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Prci13g2197 416 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 223 416 - -
Prci13g2197 416 ProSiteProfiles Protein kinase domain profile. 1 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2197 416 Pfam Protein kinase domain 222 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2197 416 SUPERFAMILY Protein kinase-like (PK-like) 137 398 IPR011009 -
Prci13g2197 416 SMART serkin_6 140 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2197 Prci-Chr13 36609429 36612593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2197 140 253 MAP Kinase Kinase Kinase AT3G13530 29.032 1.35e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Prci13g2197 Pkinase 9.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2197 - - pop:7497580 514.998