Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2185 ATGCCCCCACTCGGTGATTTTTCTCATTTTACTCATCTCAATTCTCAAGTTACTGGGATGCTGGGTCCGAGATTTTATGGATTTGGCCTGGCTGTTTCGTTTTGCTGTTTCATTCTCACAGCAGCAGCACAAATAACAGATCCTTCGGAAGTGAATGCACTGGTCCAAATCAAGAAAAGTTTGATTGATCCCAAGAACTATCTGAGGAACTGGAATAAGGGCAACCCATGTACATCAAACTGGACTGGTGTTTGGTGTTTTGATAGGGTTGGGACTGATGGATACCTCCATGTCCGTGAGCTTTACTTAATGACTTTGAATCTCTCGGGAAGTCTAGCACCTCAGCTTGGTCAGCTATCTCAGCTTCATATAATGAATTTCATGTGGAATGATCTGACAGGCACCATACCAAAGGAGATAGGAAATATCAAATCATTGACACTCTTGCTCCTGAATGGCAATAAGTTATCTGGTGCTTTGCCTGATGAACTTGGCAATCTCTCAAATTTGAATAGGTTCCAAGTTGACCAAAACCAATTGTCAGGTCCAATACCACGGTCATTTGCCAACTTGGTCAATGTTAGACACCTCCACTTGAACAACAACTCATTTACTGGTCAAATTCCACGTGAACTTTCAAACCTACCCATTCTACAGCACTTGCTTGTAGACAATAACAACTTTTCTGGCTATCTTCCACCAGAATTTTCCGAGTTACCGGCGTTGCGCATACTGCAAGTTGATAACAACAATTTCAGTGTAGCAGAAATTCCTTCTACATTTGCAAACTTTTCCAAGCTAGTAAAACTAAGTCTTAGAAACTGCAGCTCAGGAGCGGTTCCTGATCTGAGTTCAATAAAGGAGCTTACCTATTTGGATCTTAGCTGGAATCATCTTACTGGATCCATACCATCGAAGAAACTTTCAGATAATATGACAACTATTGACCTATCAAATAACAAGATCAACGGATCTATTGCTGAAAGCTTCAAATTACTTCCTTTACTTCAAAGATTGTCACTAGCGAACAACTCTTTGTCTGGATCCATCCCTGATAGTATATGGCTGAACATGTCCTTCAGTGGGAGTGCTAAGCTCACAATTGATCTTCGCAATAATTCATTTTCAGACATTTTAGGCAATTCAAGTCTTCCAGCAAATGTCACCTTGAGGCTTGCTGGCAATCCTATCTGCAAGAATTCTAACATTCAAAATATTGGTCAGTATTGTGCCTCTGAAGGGGTTGAATCTGAGGAACCTATGAATTCAACAACTTCTTGTCTTGTTCAAGCTTGTCCAGTGGATGATTTCTATGAATATGTCCCAGCTTCTCCTGTTCCCTGCTATTGTGCAGCACCTCTGAGAATTGGATATCGTCTGAAAAGCCCAAGTTTCTCTTATTTTTCTCCTTATAAAGCTTATTTTGAGTTTTATCTGACTCAGTCTTTACATTTGGGCCAATACCAAGTATGGATAGATTCAATTGCTTGGGAAGCAGGACCTCGTCTCAGGATGTATTTGAAAATTTATCCTAATTATAATGACTCCCATGCTAATAAGTTCAATACAAGTGAGGTACGGCGTATTCAAGGCATATTTGGATCATGGAATTTTCCTCGCACTGATCTTTTTGGACCATATGAACTCCTGAACTTCACTCTCCTAGGACCTTATGAAGATTTAATTGTTGAGACAAATAAGAGGAAGATCAGTACAACCGTGATAGTAGTTGCCATAATTGCAGCTATTGCTTGTGCAGCGACGATCTCTGCAATTGTCACTCTCGTGATAGCTAAAAGACATATTAAATACCGGTCCAAGCTATCCAGGAATCATATGTCCTCTAATATTTCCATCAAAATTGATGGTGTGAAAGCATTCACTTTCAAAGAACTGGCTCATGCAACTGACAATTTCAGCAGTTCAACTATAGTTGGCCAAGGAGGTTATGGGAAGGTTTATAAAGGCATTCTGTCTGATAAAACAGTTGTGGCCATAAAACGAGTAGATGAAGGTTCTTTACAAGGACAAAGAGAATTTCTGACTGAGATTGAACTTTTATCAAGGTTACATCATCGAAATCTAGTTTCATTGGTCGGATTCTGTAATGAAGAAGGAGAGCAGATTCTGGTTTACGAATTCATGCCTAATGGTACCTTGCGGGAGTGGATTTCTGGTAAAAGAAAGGGAAACCTAAACTTTGGTATGAGGTTGAGGATTGCAATGGGTGCATCCAAAGGCATACTGTATCTCCATACCGAGGCTAACCCTCCGATATTCCACCGAGATATTAAAGCTAGCAACATACTTCTGGACCGATTGCTAGTTGCTAAAGTGGCTGACTTTGGACTCTCACGTCTTGCTCCAAATATGGATGATGAAGGAAACACACCTAAATACGTGTCAACAGTTGTGAGGGGAACACCGGGGTACGTAGATCCAGAGTACTTTTTGACTCATAAGTTAACAGACAAAAGTGATGTTTATAGCTTGGGGATTGTGTTTCTAGAGCTTTTGACAAGCATGCAACCAATATCACATGGGAAAAACATTGTTCGTGAGGTTAACGAGGCTCGTCAGTGCGGCGTGATATCTTCCATTATAGATAGCAAAATGGGTTCATATCCATCAGGTTGTGTGGACAAGTTTCTAAATCTTGCCCTCAGTTGTTGCCATGAGAATCCAGAGGAGAGACCGTGCATGGCAGATGTGGTGAGGGAGCTAGAGATTATCCTTTCGAAGTTGCCAGATTCTGAAACTTCTTACCCAGACATTGCATCTGATTTTTCTCTCAAAATGGCTTCACCTTCGTCATCATCAACATCCTACATGGCAAGGGAGGGCCAACACATGTCCTCTCCTATGTTGTCAGGAAGCAACCTTGTCAGCGACGTTATTCCCACCATTGTTCCTCGTTAA 2919 0.4104 MPPLGDFSHFTHLNSQVTGMLGPRFYGFGLAVSFCCFILTAAAQITDPSEVNALVQIKKSLIDPKNYLRNWNKGNPCTSNWTGVWCFDRVGTDGYLHVRELYLMTLNLSGSLAPQLGQLSQLHIMNFMWNDLTGTIPKEIGNIKSLTLLLLNGNKLSGALPDELGNLSNLNRFQVDQNQLSGPIPRSFANLVNVRHLHLNNNSFTGQIPRELSNLPILQHLLVDNNNFSGYLPPEFSELPALRILQVDNNNFSVAEIPSTFANFSKLVKLSLRNCSLXGAVPDLSSIKELTYLDLSWNHLTGSIPSKKLSDNMTTIDLSNNKINGSIAESFKLLPLLQRLSLANNSLSGSIPDSIWLNMSFSGSAKLTIDLRNNSFSDILGNSSLPANVTLRLAGNPICKNSNIQNIGQYCASEGVESEEPMNSTTSCLVQACPVDDFYEYVPASPVPCYCAAPLRIGYRLKSPSFSYFSPYKAYFEFYLTQSLHLGQYQVWIDSIAWEAGPRLRMYLKIYPNYNDSHANKFNTSEVRRIQGIFGSWNFPRTDLFGPYELLNFTLLGPYEDLIVETNKRKISTTVIVVAIIAAIACAATISAIVTLVIAKRHIKYRSKLSRNHMSSNISIKIDGVKAFTFKELAHATDNFSSSTIVGQGGYGKVYKGILSDKTVVAIKRVDEGSLQGQREFLTEIELLSRLHHRNLVSLVGFCNEEGEQILVYEFMPNGTLREWISGKRKGNLNFGMRLRIAMGASKGILYLHTEANPPIFHRDIKASNILLDRLLVAKVADFGLSRLAPNMDDEGNTPKYVSTVVRGTPGYVDPEYFLTHKLTDKSDVYSLGIVFLELLTSMQPISHGKNIVREVNEARQCGVISSIIDSKMGSYPSGCVDKFLNLALSCCHENPEERPCMADVVRELEIILSKLPDSETSYPDIASDFSLKMASPSSSSTSYMAREGQHMSSPMLSGSNLVSDVIPTIVPR 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2185 973 FunFam Leucine-rich repeat protein kinase family protein 604 715 - -
Prci13g2185 973 SUPERFAMILY L domain-like 65 406 - -
Prci13g2185 973 SMART serkin_6 640 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2185 973 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 716 925 - -
Prci13g2185 973 Gene3D Phosphorylase Kinase; domain 1 600 715 - -
Prci13g2185 973 SMART LRR_typ_2 143 167 IPR003591 -
Prci13g2185 973 SMART LRR_typ_2 334 358 IPR003591 -
Prci13g2185 973 SMART LRR_typ_2 239 263 IPR003591 -
Prci13g2185 973 SMART LRR_typ_2 287 312 IPR003591 -
Prci13g2185 973 SMART LRR_typ_2 191 215 IPR003591 -
Prci13g2185 973 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Prci13g2185 973 Pfam Leucine rich repeat 168 228 IPR001611 GO:0005515
Prci13g2185 973 ProSiteProfiles Protein kinase domain profile. 640 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci13g2185 973 Gene3D Ribonuclease Inhibitor 210 308 IPR032675 -
Prci13g2185 973 Gene3D Ribonuclease Inhibitor 49 209 IPR032675 -
Prci13g2185 973 Gene3D Ribonuclease Inhibitor 309 399 IPR032675 -
Prci13g2185 973 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 48 209 - -
Prci13g2185 973 Pfam Protein tyrosine and serine/threonine kinase 644 909 IPR001245 GO:0004672|GO:0006468
Prci13g2185 973 ProSitePatterns Protein kinases ATP-binding region signature. 646 668 IPR017441 GO:0005524
Prci13g2185 973 CDD STKc_IRAK 646 912 - -
Prci13g2185 973 SUPERFAMILY Protein kinase-like (PK-like) 625 947 IPR011009 -
Prci13g2185 973 Gene3D Transferase(Phosphotransferase) domain 1 716 927 - -
Prci13g2185 973 PANTHER RECEPTOR-LIKE PROTEIN 55 57 915 - -
Prci13g2185 973 Pfam Leucine rich repeat N-terminal domain 48 86 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2185 Prci-Chr13 36508972 36521444 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2185 24 921 Receptor kinase-like Gene Family AT5G01950 62.639 0.0 1129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Prci13g2185 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2185 - - gmx:100815005 1362.82