Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2178 ATGGATGATGCTGGGCATCGTGAAAATGGAAGGCACAAAGCTGATCAATATAAATCAGCTCAGGGGCAGTGGTTGATGCAACATCAACCTTCCATGAAGCAAATCATGGCAATTATGGCTGAAAGAGATGCAGCCATCCAAGAGAGAAATCTGGCCCTTTCTGAAAAAAAGGCAGCTCTTGCAGAGCGTGATATGGCATTCCTGCATCGAGATACTGCCATTGCAGAACGCAACAATGCCATAATGGAACGAGATAGTGCAATTGCTACCCTTCAATATCGAGAGAACTCCTTAGCCAATGGTAGCATGTCTTCATGCCCTCCAGGATGCCAAATTGCCCGAGGTGTCAAGCATGTGCATCATCCTCAGCAACAGGTGCACCATTTACCTCATATGGGTGATACTTCATACAGCACCCGGGAAATGCACACCAGTGATGACCTTCCAGCAGCATCATTGCCTAATGAAGCTGGGAAGTCACGGCGGGCCAAGCGACCAAAGGATGGTAAGTCAACTTCACCTAGTAAGAAGACGCCGCGAGCTGCAAAAAAGATCAAGAGGGAGGGTGAAGACTTGAATAAGATGATGTTTGGCAAGGCGCATGAATGGAAGAGTGGTCAGGAAATGGTTAATGGAGGTGATGATCTTAACAAGCAGTTAGGGTCATCAAAGGCAGATTGGAAGGGTCAGGACTTGGGGTTGAATCAAGTGGTATATGATGAATCAACCATGCCAGCTCCTGTATGCTCTTGTACTGGTGTTCTGAGACAATGTTACAAATGGGGGAATGGGGGCTGGCAGTCTGCTTGTTGCACAACAACTCTATCAATGTATCCACTTCCAGCAGTACCCAACAAGAGACATGCCCGGGTTGGTGGTCGAAAGATGAGTGGAGGTGCTTTCAATAAGTTGCTTAGCCGGCTTGCAGCAGAGGGCCATGATCTGTCAAATGCAGTTGACCTGAAGGACCACTGGGCCAAGCATGGCACAAATCGCTATATCACAATCAAGTAG 1014 0.4773 MDDAGHRENGRHKADQYKSAQGQWLMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAFLHRDTAIAERNNAIMERDSAIATLQYRENSLANGSMSSCPPGCQIARGVKHVHHPQQQVHHLPHMGDTSYSTREMHTSDDLPAASLPNEAGKSRRAKRPKDGKSTSPSKKTPRAAKKIKREGEDLNKMMFGKAHEWKSGQEMVNGGDDLNKQLGSSKADWKGQDLGLNQVVYDESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGGAFNKLLSRLAAEGHDLSNAVDLKDHWAKHGTNRYITIK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2178 337 MobiDBLite consensus disorder prediction 1 21 - -
Prci13g2178 337 SMART GAGA_bind_2 1 337 IPR010409 -
Prci13g2178 337 MobiDBLite consensus disorder prediction 1 15 - -
Prci13g2178 337 MobiDBLite consensus disorder prediction 158 174 - -
Prci13g2178 337 PANTHER - 1 337 IPR010409 -
Prci13g2178 337 MobiDBLite consensus disorder prediction 121 189 - -
Prci13g2178 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
Prci13g2178 337 MobiDBLite consensus disorder prediction 129 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2178 Prci-Chr13 36490235 36494803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2178 65 337 BBR or BPC Transcription factor family AT5G42520 64.828 7.31e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Prci13g2178 GAGA_bind 2.1e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2178 - - gmx:100783502 603.979