Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2170 ATGATTAGGGTTAGGGCAATCACGCGCATGGAAGCTTCCTCCGACCCCGTCACTCCTCCGGTGACTTCCATCTCCAATCGCTACGGTATCCCATCCGCTTCTAACATTCTTCAGGCTCCGTTATCGCTCTTGTTGGAGCATTTAGGGATTCTGCGAAGCAGGTCTAATCAGCAAGAGACTGAACCTTTAATCAACAACAATCGACTGTCTTCTGGACTCCGTGATGCTCTCCGGAGTCGCCTTGACGAGTCCTCCGTCATTACTAATGATGGTGAGGTGTCGATTAGTATTATAGGGGCTGGGGATCAGCGCCTTGACAGGGAAGGCGAAGTGAGGGAAGTTCTGTCTCGGAATGATGTATCGATATCGGCGCAACCCTTGGCTGGGATGCCCTCTACGACGCTTACCCCTGCTTCGGGCAATCAGGAACATTCTAGGACTGATCATGATGCTGGAGAGGGCGTTTCCCAATCCGTGAATGCGAATTCTGATGCAGAGGCTGGTGATGGAGTTGGTGCTAACGATAGGGATTCTTCCTCACAGAGGTATGATATTCAGCAGGCTGCTCGCTGGATTGAACAGATCCTGCCCTTTTCCTTACTGTTGCTGGTTGTCTTCATTCGGCAGCACCTTCAAGGGTTTTTTGTTACAATTTGGGTTACTGCTGTCCTTTTCAAATCAAATGATATTTTGAGGAAGCAGACAGCTCTTAAGGGAGAGAGGAAAGTCCCTGTATTGACTGCTATTTCTATTGCATTTACATTGCACGTGGTTGGTGTATATTGGTGGTGTCAGAATAATGATATGCTATATCCGTTGGCTATGCTTCCTCCTAAAGTCATACCTCCATTCTGGCATGTTATTTTCATCATCACAGTGAATGATGCTTTGGTACGCCAGGCAGGAATGGTATTCAAGTGTATCTTGTTGATGTATTACAAGAATGGCAGAGGCAGAAATTATCGTAAGCAGGGTCAAATGCTGACTTTGGTTGAGTACCTACTACTTCTTTACCGTGCCTTGTTGCCAACTCCAGTATGGTATCGGTTCTTCTTGAACAAAGAATATGGAAGTTTCTTTTCTTCATTGATGACAGGATTATATCTAACATTCAAGCTGACATCAGTCATCGAAAAGGTGCAATCCTTCTTTGCTGCAGTGAAGGCATTGTCGTGTAAAGAAGTGCACTATGGGGCTCATGCAACATCTGAACAGGTGAATGTTGTTGGTGATCTTTGTGCTATTTGCCAGGAAAAGATGCATACCCCAATCTTACTTTCTTGCAATCACATCTTCTGCGAAGAATGTGTATCAGAATGGTTTGAGAGGGAAAGGACCTGCCCCTTGTGCAGGGCATTGGTAAAACCTGCAGATCTGAAATCATTTGGGGATGGCTCTACTAGTTTGTTTTTCCAGTTATTCTGA 1425 0.4554 MIRVRAITRMEASSDPVTPPVTSISNRYGIPSASNILQAPLSLLLEHLGILRSRSNQQETEPLINNNRLSSGLRDALRSRLDESSVITNDGEVSISIIGAGDQRLDREGEVREVLSRNDVSISAQPLAGMPSTTLTPASGNQEHSRTDHDAGEGVSQSVNANSDAEAGDGVGANDRDSSSQRYDIQQAARWIEQILPFSLLLLVVFIRQHLQGFFVTIWVTAVLFKSNDILRKQTALKGERKVPVLTAISIAFTLHVVGVYWWCQNNDMLYPLAMLPPKVIPPFWHVIFIITVNDALVRQAGMVFKCILLMYYKNGRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSFFSSLMTGLYLTFKLTSVIEKVQSFFAAVKALSCKEVHYGAHATSEQVNVVGDLCAICQEKMHTPILLSCNHIFCEECVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQLF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2170 474 MobiDBLite consensus disorder prediction 122 179 - -
Prci13g2170 474 Pfam Zinc finger, C3HC4 type (RING finger) 411 454 - -
Prci13g2170 474 MobiDBLite consensus disorder prediction 122 142 - -
Prci13g2170 474 CDD RING-HC_RNFT1-like 411 451 - -
Prci13g2170 474 ProSitePatterns Zinc finger RING-type signature. 428 437 IPR017907 -
Prci13g2170 474 ProSiteProfiles Zinc finger RING-type profile. 413 451 IPR001841 -
Prci13g2170 474 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 19 474 IPR044235 GO:0061630|GO:1904294
Prci13g2170 474 SMART ring_2 413 450 IPR001841 -
Prci13g2170 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 468 IPR013083 -
Prci13g2170 474 SUPERFAMILY RING/U-box 405 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2170 Prci-Chr13 36407470 36413254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2170 27 474 C3H Transcription Factor Family AT5G01960 66.592 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2170 - K22379 csav:115694696 657.136