Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2027 ATGAGTACTCGTTCTGTTGGGGGGCATGCTCTCAGAAGTTACCGACGAAGGAAGGCTGTTTTGGATTTGGATCTTAATAGAGCTCCACCTGGTGAGAATCGGGAACAAGAGGGACCTTCCATTCCACCTGAACCCCAGCTAGTTCAAGCTGTCCAGCAACCACAAGTTGTACAGCCTATTGATGTGGAGGCCATTGATGATGATGTTATAGAATGCACAGCAAGAGCTTTTGCTGAAGCTAAAAACAATTCAAGAAGGAATCGTGGGAGGACTATAGTTGATGTGGATTTTGATCAGAGTCATATAGCTGAAAATGCTCCCAATTATTGCGGAAGAGATTCTTCTAGCCAAACAATTCTCAATACTGATCAATATATAAACTTGGAAGGCAGTGGCAGCTCTGAGTGGGGGAACGATAAAAAGTCATCTAAACCTCCAATGGAGCCTGTCTTTAGCTGTCCAATATGTATGGGCCCATTTATAGAGGAAGTGTCAACAAGGTGTGGTCATATATTCTGTAAGAGTTGCATTAAGGCTGCTATAAGTGCACAGGGCAAATGCCCTACATGTAGGAAAAAGGTTACTGCAAAAGAGCTCATAAGGGTGTTTCTACCATCAACTAATTGA 627 0.4306 MSTRSVGGHALRSYRRRKAVLDLDLNRAPPGENREQEGPSIPPEPQLVQAVQQPQVVQPIDVEAIDDDVIECTARAFAEAKNNSRRNRGRTIVDVDFDQSHIAENAPNYCGRDSSSQTILNTDQYINLEGSGSSEWGNDKKSSKPPMEPVFSCPICMGPFIEEVSTRCGHIFCKSCIKAAISAQGKCPTCRKKVTAKELIRVFLPSTN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2027 208 ProSiteProfiles Zinc finger RING-type profile. 153 191 IPR001841 -
Prci13g2027 208 Pfam Zinc finger, C3HC4 type (RING finger) 153 190 - -
Prci13g2027 208 MobiDBLite consensus disorder prediction 21 44 - -
Prci13g2027 208 ProSitePatterns Zinc finger RING-type signature. 168 177 IPR017907 -
Prci13g2027 208 PANTHER ELFLESS, ISOFORM B 1 208 - -
Prci13g2027 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 206 IPR013083 -
Prci13g2027 208 SMART ring_2 153 190 IPR001841 -
Prci13g2027 208 SUPERFAMILY RING/U-box 147 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2027 Prci-Chr13 35291447 35295706 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2027 12 207 C3H Transcription Factor Family AT5G48655 51.256 7.21e-48 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2027 K22651 - gmx:100792853 254.603