Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1935 ATGAGTTATTGGTCACTATCATCTGTTCTTAATAATCAGCCTATGCCATTGTCTGCTGCAAGCACCAAATCTTCTGTTCATATCGAAAGCAGCGCCTGTTTTATAAGTAGTCTGAGCCAACGAAGGTCCAACAAGGAACTTGGGAAGAACCTGATGATGGCAGTGGGAGTGAGTATGATGATGACGAAGAAGATGAGCAAACAGAAGATGAGAACTATGGCTTTGAAAGTGATTGGGAAGAGGAAGGGATTACAACATCAGCCATTAATGATATTAAAAAAAGAGGTTGAACAGCTTTTGGAGCCAGAAGAAAGAGCAGTCTTGCAACAGAATGTGACTCCTAACTTGAGAAAAATCTCAACTGAAAAATGGAGCCCTCTGCACACTTTAGCACTATCCACACAGATAAGATGCATGGATCAACTTCTTGAAAGTGGGGTTGATATTGATCTTAAGAACAAGGAAGGTCTGACCGCACTTCATACAGCTATTATAGGAAAGAAAGAAGCTGTAATAAGCCATCTTTTACGGAAAGGTGCAAGTCCCCATGTCAAGGATAAGGATGGTGCTACCCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTAAAGCTATTGATCAAATATAAAGTTGATGTCAATGTTGCAGATCATGAAGGTTGGACTCCATTGCACGTTGCTATTCAGAGCAGAAATAGAGATATTGCAAAAATTTTGTTAGTCAATGGTGCAGATAAGACCAGAAGAAATAAGGATGGGAAAACAGCATTGGATCTGAGTTTATGTTATGGGAAGAATTTCAAGTCTTATGATCTTGGCAAATTACTGAAGGTAGTTCCAGCTGACAGTGATTTTTGA 864 0.3981 MSYWSLSSVLNNQPMPLSAASTKSSVHIESSACFISSLSQRRSNKELGKNLMMAVGVSMMMTKKMSKQKMRTMALKVIGKRKGLQHQPLMILKKEVEQLLEPEERAVLQQNVTPNLRKISTEKWSPLHTLALSTQIRCMDQLLESGVDIDLKNKEGLTALHTAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYKVDVNVADHEGWTPLHVAIQSRNRDIAKILLVNGADKTRRNKDGKTALDLSLCYGKNFKSYDLGKLLKVVPADSDF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1935 287 ProSiteProfiles Ankyrin repeat region circular profile. 155 187 - -
Prci13g1935 287 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 60 279 - -
Prci13g1935 287 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Prci13g1935 287 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Prci13g1935 287 Gene3D - 92 191 IPR036770 -
Prci13g1935 287 ProSiteProfiles Ankyrin repeat profile. 122 154 IPR002110 GO:0005515
Prci13g1935 287 Gene3D - 192 278 IPR036770 -
Prci13g1935 287 ProSiteProfiles Ankyrin repeat profile. 188 220 IPR002110 GO:0005515
Prci13g1935 287 SUPERFAMILY Ankyrin repeat 115 266 IPR036770 -
Prci13g1935 287 ProSiteProfiles Ankyrin repeat region circular profile. 221 247 - -
Prci13g1935 287 SMART ANK_2a 122 151 IPR002110 GO:0005515
Prci13g1935 287 SMART ANK_2a 221 250 IPR002110 GO:0005515
Prci13g1935 287 SMART ANK_2a 155 184 IPR002110 GO:0005515
Prci13g1935 287 SMART ANK_2a 188 217 IPR002110 GO:0005515
Prci13g1935 287 ProSiteProfiles Ankyrin repeat region circular profile. 188 219 - -
Prci13g1935 287 Pfam Ankyrin repeats (3 copies) 170 252 IPR002110 GO:0005515
Prci13g1935 287 PRINTS Ankyrin repeat signature 237 251 IPR002110 GO:0005515
Prci13g1935 287 PRINTS Ankyrin repeat signature 189 204 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1935 Prci-Chr13 34341756 34346670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1935 107 262 Ion Channels AT2G25600 30.128 3.19e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1935 - - gmx:100818556 343.969