Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1931 ATGGAAAACGATTTCTTTTTAAATGCTTCAGCTATGCACTTCGAGCCTTCTTCGTCTTCTTCTCCTTCAATGCCCACGTGGCCATCACTCTCTTCCTCCGCCATGGATATTCCTGTTGCCTCTGAGCAACACCAGCAAGACTATTTCTACAATCCCGCATGGGAAAAGTCAACCCTGGATCTTCATCATCATCATCACGGTCTTCAGTTCGATTCTGCGTTGAGTTCGATGGTTTCTTCACCTGCAGCTTCCAATTCGAACTTGTCCAGTGACAATTTCGTCATCAGAGAGTTGATTGGGAAATTGGGGAATATTGGGAACTCCGGCGAGATCTCTTCTTACATGAACGGAAATAACAGTACCAACACTTCATGTTATAGCACGCCTTTGAGCTCTCCTCCTAAACTGAACATTCCTCCTCCATTGATGAATAACAACCAGTTGATGAAAGACAAATTACCAATGGCTTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGGTTTGCTGAGAGAGCTGCCAAGTTTTCTTGCTTTGGAAGCAGGAGTTTTAATGGCAGAAGTTCAAGACAACTTGGGATGAATAATAATGCTGACTTCACACAGAGATCTAGTCCATTAGTGGAAAATGGCAAGCTTCCTAGAGTATTAAGTAGCCCATCCCTGAAAGCACTTGGATCTCAAATGGAAAATAAGAATTCTCCTTTGCATTCTCAGGAGGAATCTACAATCTCTGAGCAAAACCCAAATCGGGAATCTGGGGTCAAACTTTCCCCTCCTGATGTGAATTCCAGAAAGAGGAAAGCTTCTTCCAAGGGAAACCCAAAGAAACTCCTTCCTCCACCAATCCTCCCAAGGTAAATGAATTCTGTCACAACTGCTGCTGAAGCTAATGAAGATTCAGGGCCAAAGCGCAGCAAGTCAAATGAAGGGGAAGGACATGAAAACGGTCAACTGAAGGCAGAAGAAGAGCCAAAAGGAGGTAACAACAATGGTGGGGATGAAAAACAGAGCAAGAGCAACAACTCAAAACCTCCTGAGCCTCCCAAGGACTACATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGCCACAGTCTTGCTGAAAGAGTAAGGAGGGAGAAAATCAGTGAGAGAATGAAGCTTCTGCAAGATCTTGTACCTGGTTGCAACAAGGTCACTGGAAAAGCTCTTATGCTTGATGAAATCATAAACTATGTACAATCATTGCAGCGTCAAGTTGAGTTCCTTTCTATGAAATTGGCCTCAGTGAACGCCAGGCTTGATGTGAGCATTGACAATCTTATCTCAAAAGATATATTTCAGTCAAATAACTCTTTGGCACACCAAGCAGCAATATTCCCGCTAGACTCCTCTGCCACAGCCTTTTATGGCCCCAACCCAGCAAGCCATAATGCCATCCCTAATGGAACTGTTGCCCACTCAATGGAATCTTTAGATTCTGCTCTCTGCCAAAGCCTTGGCATCCAGTTACCCCCTCTGAATGGTTTCAATGAAGGTGCTTCTCAGTATCCAATGACTTTTTCTGAGGAAGACCTCCACACCATTGCTCAGATGGGGTTTGGTCAAACAGAAAATGGAAAAACACCAACACAATCTCCAAGCTTTAATGGTTCAAACCAGATACCCCATATGAAAGTTGAGCTTTGA 1677 0.4389 MENDFFLNASAMHFEPSSSSSPSMPTWPSLSSSAMDIPVASEQHQQDYFYNPAWEKSTLDLHHHHHGLQFDSALSSMVSSPAASNSNLSSDNFVIRELIGKLGNIGNSGEISSYMNGNNSTNTSCYSTPLSSPPKLNIPPPLMNNNQLMKDKLPMALNSSVAEFSADPGFAERAAKFSCFGSRSFNGRSSRQLGMNNNADFTQRSSPLVENGKLPRVLSSPSLKALGSQMENKNSPLHSQEESTISEQNPNRESGVKLSPPDVNSRKRKASSKGNPKKLLPPPILPRXMNSVTTAAEANEDSGPKRSKSNEGEGHENGQLKAEEEPKGGNNNGGDEKQSKSNNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNARLDVSIDNLISKDIFQSNNSLAHQAAIFPLDSSATAFYGPNPASHNAIPNGTVAHSMESLDSALCQSLGIQLPPLNGFNEGASQYPMTFSEEDLHTIAQMGFGQTENGKTPTQSPSFNGSNQIPHMKVEL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1931 558 Gene3D - 359 435 IPR036638 GO:0046983
Prci13g1931 558 MobiDBLite consensus disorder prediction 301 331 - -
Prci13g1931 558 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 242 459 IPR024097 GO:0006355
Prci13g1931 558 MobiDBLite consensus disorder prediction 529 551 - -
Prci13g1931 558 MobiDBLite consensus disorder prediction 529 558 - -
Prci13g1931 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 430 IPR036638 GO:0046983
Prci13g1931 558 MobiDBLite consensus disorder prediction 332 346 - -
Prci13g1931 558 CDD bHLH_AtBPE_like 352 437 - -
Prci13g1931 558 MobiDBLite consensus disorder prediction 125 147 - -
Prci13g1931 558 MobiDBLite consensus disorder prediction 188 369 - -
Prci13g1931 558 MobiDBLite consensus disorder prediction 188 209 - -
Prci13g1931 558 Pfam Helix-loop-helix DNA-binding domain 366 413 IPR011598 GO:0046983
Prci13g1931 558 Coils Coil 409 429 - -
Prci13g1931 558 MobiDBLite consensus disorder prediction 350 369 - -
Prci13g1931 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 412 IPR011598 GO:0046983
Prci13g1931 558 FunFam Basic helix-loop-helix transcription factor 359 431 - -
Prci13g1931 558 SMART finulus 368 418 IPR011598 GO:0046983
Prci13g1931 558 MobiDBLite consensus disorder prediction 222 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1931 Prci-Chr13 34291050 34294407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1931 1 512 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 45.747 3.92e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci13g1931 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1931 - - gmx:100812081 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g1931 13 34291050 34294407 Prci12g0555 12 4838755 4841978 CCT