Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1927 ATGGCAAAGTCTGGCGTGGCGGTGGCGGACTCTGATCCAGCTGTGGCGACAAAGGTGTTGGAATTGAAGAAGGAATTGAACAGGTTGGTGAACTCCATCATCGACGATGATGATTGCAGCATACAAACCATTGATCAAGCTAAGGAAGCTCTTTCGACTCTTAAGGACCTCAAGCTTCGAAAGAGATCGTCATCGTCACCATCTTCACAATCTTCGTCGTTTAAGCTAAGCAAAAATTCTGGTTTTCCAGAAGAATTTAAGTGTCCTCTTTCTAAGGAATTGATGAGAGATCCTGTCATTGTGGCATCTGGAAAGACATATGATAGACCCTTCATTCAAAAATGGCTGAAAGCTGGGAACAGAACTTGTCCTCAAACCCAACAAGTCCTCTCACACGCTGTCCTCACTCCAAATCACCTCATAAGGGAAATGATAGAACAGTGGTGCAAGAACCATGGGGTAGAATTATCCAACCAACTTGAGTGTATTTACAATGAGGAAGACATAATAACAAAAGCAGATCACGATCACTTTCATTCTTTGCTCGAGAAAATGTCCTCATCATCACTTTCTGAGCAGAAAGCAGCCGCAAAGGAGCTTCGCTTATTGACAAAGAAGATGCCTTTGTACAGAACACTCTTTGGTGAGACTTCACATGCCATTTCTGAGTTTCTCAAACCAGTCTCTGCAAGCGACTCTTTGAACAACATTCATCCTGATCTCCAAGAAGATGTGATCACAACACTTTTGAACATCTCAATCCATGACAACAACAAGAAGCTTGTCGCAGAAACTCCTATGGTGATTCCAATTCTTGTGAAAGCCTTAAAATCGGGAACAATAGAAACTAGAAGCAATTCTGCAGCTACCCTTTTCACTTTATCTGCTCTAGACTCAAACAAAGATCTCATAGGAAAATCTGGAGCCTTGAAGCCGTTAATTGACCTCTTAGAAGAAGGGCATCCCTTAGCCATGAAAGATGTTGCTTCAGCAATTTTCACCTTGTGTGTGGTTCACGAGAACAAGGCAAGAGCAGTGAGGGAAGGGGCAGTGAGTGTTATATTGAGGAAGATCTCAAGCCGGGTTTACGTGGACGAATTGCTCACAATCCTCGCGCTGCTCTCAAGTCATCAAAAGGCTGTCCAGGACATGCTAGATCTTGGAGCTGTTCCTAACTTGCTGAGCATCATGAGGGAGAGCAATTGTGAACGAAACAAGGAGAACTGCATAGCGATTCTTCAAACTATATGTCAGCATGACAGAGGAAAATTGAAGGAGATAAAAGAGGAGGAGATTACCTATAGAACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGAAAGGCTAGTGGAATTCTTGAGAGGCTGAATAGGGTTGTTAATATTACACACACTGCATGA 1410 0.4291 MAKSGVAVADSDPAVATKVLELKKELNRLVNSIIDDDDCSIQTIDQAKEALSTLKDLKLRKRSSSSPSSQSSSFKLSKNSGFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQQVLSHAVLTPNHLIREMIEQWCKNHGVELSNQLECIYNEEDIITKADHDHFHSLLEKMSSSSLSEQKAAAKELRLLTKKMPLYRTLFGETSHAISEFLKPVSASDSLNNIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPILVKALKSGTIETRSNSAATLFTLSALDSNKDLIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVVHENKARAVREGAVSVILRKISSRVYVDELLTILALLSSHQKAVQDMLDLGAVPNLLSIMRESNCERNKENCIAILQTICQHDRGKLKEIKEEEITYRTITDLALNGTSRAKRKASGILERLNRVVNITHTA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1927 469 SMART Ubox_2 85 148 IPR003613 GO:0004842|GO:0016567
Prci13g1927 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 155 IPR013083 -
Prci13g1927 469 CDD RING-Ubox_PUB 83 135 IPR045210 -
Prci13g1927 469 Gene3D - 218 362 IPR011989 -
Prci13g1927 469 SMART arm_5 377 418 IPR000225 GO:0005515
Prci13g1927 469 SMART arm_5 297 337 IPR000225 GO:0005515
Prci13g1927 469 SMART arm_5 255 296 IPR000225 GO:0005515
Prci13g1927 469 FunFam RING-type E3 ubiquitin transferase 168 465 - -
Prci13g1927 469 Pfam U-box domain 83 152 IPR003613 GO:0004842|GO:0016567
Prci13g1927 469 SUPERFAMILY ARM repeat 162 459 IPR016024 -
Prci13g1927 469 ProSiteProfiles U-box domain profile. 81 155 IPR003613 GO:0004842|GO:0016567
Prci13g1927 469 PANTHER U BOX DOMAIN-CONTAINING 37 459 - -
Prci13g1927 469 MobiDBLite consensus disorder prediction 63 79 - -
Prci13g1927 469 SUPERFAMILY RING/U-box 81 156 - -
Prci13g1927 469 MobiDBLite consensus disorder prediction 59 82 - -
Prci13g1927 469 FunFam RING-type E3 ubiquitin transferase 81 155 - -
Prci13g1927 469 Gene3D - 363 463 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1927 Prci-Chr13 34244668 34247751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1927 144 469 U-box Gene Family AT3G07360 60.606 4.90e-133 385