Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1925 ATGGGGCCAAATGCAGGTTCTTTGTCGGTGGTGGCGAAACAGGCGGAGAAACTTCGAATAAACGGCAATACTTACTTCAAGAAAGATCGCTTCGGAGCTGCCATCGATGCTTATACGGAGGCTATTACTCTGATGCCCAACAATCCGGTTTATTTCACGAATCGTGCTCTATGCCATCGTAAGCGGAATGACTGGCCGAAAGTGGAGGAAGATTGTCGGAAAGCTATTCAACTTAATCACAATTCAGTCAAGGCCCACTATATGTTGGGACTTGCATTGCTGCAGAGACAAGAATATGCCAAGGGAATAGCAGAATTAGAGAAGGCTTTGGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAAGAGCTAGCAAAAGCAAAATACCTAGAATGGGAACGTTCATCTACCAAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTTTAAAGGAAACGCATCTACAAGACGTCTCCCAGAAGGAAGGCTTTGTAGATGAAGATCCAACCACCCCATCAGAACAGTTAGCGGCTTTAGGAAGAGTGTTTGGTAAAGCCGCAGAGGATGATACACCTGCTGAGGTGCCAGATCATCTTTGCTGTAGAATTTCACTTGAAATTTTCCGGGATCCTGTCATCACTCCAAGTGGTCTTACATATGAAAGGGCAGTGATTCTTGAACATCTTGAGAAGTATGGACGTAAACGGTGA 741 0.4575 MGPNAGSLSVVAKQAEKLRINGNTYFKKDRFGAAIDAYTEAITLMPNNPVYFTNRALCHRKRNDWPKVEEDCRKAIQLNHNSVKAHYMLGLALLQRQEYAKGIAELEKALDLGRGANPKGYMVEEIWQELAKAKYLEWERSSTKRSWELQSLKEACESALKETHLQDVSQKEGFVDEDPTTPSEQLAALGRVFGKAAEDDTPAEVPDHLCCRISLEIFRDPVITPSGLTYERAVILEHLEKYGRKR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1925 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 243 IPR045200 GO:0000209|GO:0061630
Prci13g1925 246 SMART tpr_5 83 116 IPR019734 GO:0005515
Prci13g1925 246 SMART tpr_5 49 82 IPR019734 GO:0005515
Prci13g1925 246 SMART tpr_5 15 48 IPR019734 GO:0005515
Prci13g1925 246 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Prci13g1925 246 Pfam U-box domain 205 241 IPR003613 GO:0004842|GO:0016567
Prci13g1925 246 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Prci13g1925 246 SUPERFAMILY TPR-like 12 131 IPR011990 GO:0005515
Prci13g1925 246 ProSiteProfiles U-box domain profile. 204 246 IPR003613 GO:0004842|GO:0016567
Prci13g1925 246 Pfam Anaphase-promoting complex, cyclosome, subunit 3 43 109 - -
Prci13g1925 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 246 IPR013083 -
Prci13g1925 246 SUPERFAMILY RING/U-box 197 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1925 Prci-Chr13 34228969 34237442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1925 10 244 U-box Gene Family AT3G07370 68.085 4.48e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1925 K09561 - gmx:100796519 393.275