Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1924 ATGGGGCCAAATGCAGGTTCTTTGTCGGTGGTGGCGAAACAGGCGGAGAAACTTCGAATAAACGGCAATACTTACTTCAAGAAAGATCGCTTCGGAGCTGCCATCGATGCTTATACGGAGGCTATTACTCTGATGCCCAACAATCCGGTTTATTTCACGAATCGTGCTCTATGCCATCGTAAGCGGAATGACTGGCCGAAAGTGGAGGAAGATTGTCGGAAAGCTATTCAACTTAATCACAATTCAGTCAAGGCCCACTATATGTTGGGACTTGCATTGCTGCAGAGACAAGAATATGCCAAGGGAATAGCAGAATTAGAGAAGGCTTTGGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAAGAGCTAGCAAAAGCAAAATACCTAGAATGGGAACGTTCATCTACCAAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTTTAAAGGAAACGCATCTACAAGACGTCTCCCAGAAGGAAGGCTTTGTAGATGAAGATCCAACCACCCCATCAGAACAGTTAGCGGCTTTAGGAAGAGTGTTTGGTAAAGCCGCAGAGGATGATACACCTGCTGAGGTGCCAGATCATCTTTGCTGTAGAATTTCACTTGAAATTTTCCGGGATCCTGTCATCACTCCAAGTGGTCTTACATATGAAAGGGCAGTGATTCTTGAACATCTTGAGAAGGTAAGACATATTCATGCAAGATGCAATTTTCGCTCATATCTTAATTGTGTAGCTTGGAGGATGGAGGAAAAGGTGGGGGGGGGGGAAATAGAAGAGAGAATTATGAAGAGAAATGTCTAA 843 0.4496 MGPNAGSLSVVAKQAEKLRINGNTYFKKDRFGAAIDAYTEAITLMPNNPVYFTNRALCHRKRNDWPKVEEDCRKAIQLNHNSVKAHYMLGLALLQRQEYAKGIAELEKALDLGRGANPKGYMVEEIWQELAKAKYLEWERSSTKRSWELQSLKEACESALKETHLQDVSQKEGFVDEDPTTPSEQLAALGRVFGKAAEDDTPAEVPDHLCCRISLEIFRDPVITPSGLTYERAVILEHLEKVRHIHARCNFRSYLNCVAWRMEEKVGGGEIEERIMKRNV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1924 280 SMART tpr_5 83 116 IPR019734 GO:0005515
Prci13g1924 280 SMART tpr_5 49 82 IPR019734 GO:0005515
Prci13g1924 280 SMART tpr_5 15 48 IPR019734 GO:0005515
Prci13g1924 280 SUPERFAMILY RING/U-box 197 249 - -
Prci13g1924 280 SUPERFAMILY TPR-like 12 131 IPR011990 GO:0005515
Prci13g1924 280 SMART Ubox_2 208 260 IPR003613 GO:0004842|GO:0016567
Prci13g1924 280 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Prci13g1924 280 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Prci13g1924 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 244 IPR045200 GO:0000209|GO:0061630
Prci13g1924 280 Pfam Anaphase-promoting complex, cyclosome, subunit 3 43 109 - -
Prci13g1924 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 253 IPR013083 -
Prci13g1924 280 ProSiteProfiles U-box domain profile. 204 241 IPR003613 GO:0004842|GO:0016567
Prci13g1924 280 Pfam U-box domain 205 244 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1924 Prci-Chr13 34228966 34236115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1924 10 242 U-box Gene Family AT3G07370 68.670 1.68e-116 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1924 K09561 - gmx:100796519 392.119