Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1855 ATGTTGAAAAAGGAAGATAACCGTATTTATAGTGCTAATTTCAAAATTTCCAGTATTAATGCACCAGATATGGGTGTTCTCTATTCGCCCAATTTTATGTTTTCTTTTCTAAATGCAAAATTTTTAAATACAGATAATTCAAATCTGCTAATGCAGCAAATCCCTACTCTGGTTGTCTCCAGATATTGTCCTATTTTACCGAAAAGAGCAACACTTGTTAGAACTTCTTCGAAGAACAGATCATGGGAGGTTGATATTGAGGAAGAAGATGACAAAAGATTCTATCTCAAAAATGGTTGGAATACATTTGTAGAAGATAATGATTTGGAAACTGCTGAGTTTCTGGTTTTCAAATTCGATGGGGATTGCAGCAGGTATGAGGGAACAATTGTGGAAGCATTCAGTGAAGGCCCCAACTTGGACTGTAATGAGAATCCTTCATTCAAAATTATTCTGCAACAAGCCTATGCCAAAAAAGGTGTCATGTGCTTTCCAACCGACTTCTTCAAGAAGCATATGAAAAACAAAAGACAAGAGGTAGAGATTGAGATAGTAGAAGGAGTATGGACTGTGACATTAATCCCCCATAAGAAAAGGGCTAGGACATTCGCCAGATTCAGTGAAGGGTGGTCAAATTTTGCCAAAGCGAACCATTTTAAAACCGGAGAGACTCATTTTTTAAATGATTCGGAAAGGTAA 699 0.3677 MLKKEDNRIYSANFKISSINAPDMGVLYSPNFMFSFLNAKFLNTDNSNLLMQQIPTLVVSRYCPILPKRATLVRTSSKNRSWEVDIEEEDDKRFYLKNGWNTFVEDNDLETAEFLVFKFDGDCSRYEGTIVEAFSEGPNLDCNENPSFKIILQQAYAKKGVMCFPTDFFKKHMKNKRQEVEIEIVEGVWTVTLIPHKKRARTFARFSEGWSNFAKANHFKTGETHFLNDSER 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1855 232 SUPERFAMILY DNA-binding pseudobarrel domain 45 123 IPR015300 -
Prci13g1855 232 PANTHER B3 DOMAIN-CONTAINING 40 123 - -
Prci13g1855 232 CDD B3_DNA 61 126 IPR003340 GO:0003677
Prci13g1855 232 ProSiteProfiles B3 DNA-binding domain profile. 147 232 IPR003340 GO:0003677
Prci13g1855 232 SMART B3_2 38 137 IPR003340 GO:0003677
Prci13g1855 232 SMART B3_2 148 232 IPR003340 GO:0003677
Prci13g1855 232 Gene3D - 133 229 IPR015300 -
Prci13g1855 232 Pfam B3 DNA binding domain 43 124 IPR003340 GO:0003677
Prci13g1855 232 Pfam B3 DNA binding domain 148 227 IPR003340 GO:0003677
Prci13g1855 232 CDD B3_DNA 148 224 IPR003340 GO:0003677
Prci13g1855 232 Gene3D - 29 132 IPR015300 -
Prci13g1855 232 SUPERFAMILY DNA-binding pseudobarrel domain 144 224 IPR015300 -
Prci13g1855 232 ProSiteProfiles B3 DNA-binding domain profile. 37 134 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1855 Prci-Chr13 32982706 32985408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1855 41 121 REM Transcription Factor Family AT3G06220 37.349 1.38e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci13g1855 B3 1.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1855 - - pcin:129290226 479.944