Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1854 ATGTCTTCTTTCTTCAGAGTCCTCATCGACGAGTACGCTACTAAATTGCGAATCCCTTCCCTGTTTGTCTCCAGATTTTCTTGTCTTACACCAAAAACAGTAACACTTGTATGTTCTTCAAAAAGATCATGGAAGGTTGATATCGAGGAAGGAGATCACAAAGAATTGTACTTCAAAAGAGGTTGGAATACATTTGTAGAAGATAATGCTTTAGAAACTGGGGAGTTTGTAGTTTTCAAATTCGATGGGAATTCAATATTTAAAGCTAACATATTTGGAAAATCTTACCTCAGAAGAAAAGCCCCAATGTCAATGCCTTCTTTCTTCAAGGTCCTCGTTGACAGCAAGTACACTACTAAATTGCGAATCCCTTTGTTGTTTCTCTCCAAATATTCTACTCTTGTCCCAAAAAGAGTAACACTGATCAGGGCTTCTTCAAACAGATCATGGAAGGTTGATATTGAGGAAGAAGATGACAAAAGGTTGTATTATAAGAATGGTTGGAGTACATTTGTAGAAGATAATGCTTTGGAAATTGCACAGTTTCTAGTTTTCAAATTTGATGGGGATTCAACATTTAAAGTTAAGATCTATGGGAACTCTGCCTGTGAGAAGGAGCTTGAGAATCAGCCATGTATAAATCAAAATTACTGCATACAGCATTATAAACAAACAACAACTCGACTTCATCAAGAAACTCAGAGAGAAATAGATCCAATTCATGTAGATAGACAAAAGTCAGGGCTGAATGTTGAGATCACAGAGGAGAGAGTAGATCATGATGATTATCACAATTCTAACCAGGGAACTGGGGCTCCCCAGAAAGAAGTTGAAGAAGAACAAAGCAATGGGCATATTGCTTTGCAGGGTGAATCTCAGAGAGAACAAAGCAATGAGCATATTGCTTTACAACATGAATCTCATAGCCCTATCAGGAATAGTGGGAACGGAAGCACGTGTGAGGGACCAATGCTGAAGGAATCCAGTGAAGCCCCCAAATTGAGCCCTAAGAAAATTCCTTCATTCAAAATTCTTCTGCAGCAAGCCTATGCAGAAAAGGGTGTCATGTGCTTTCCCACAGAGTTCTTCAAGAAGCATATGAAAAACAAGAGACAAGAGGTGGAGATCGAGACAATAGATGGAGTATGGAAAGTGACATTACTCCCTCACATGAAAAGGACAAGGACATTTGCCAGATTCAGTAAAGGGTGGTCAGAATTTGCCAAAGCAAATCATTTTAAAACTGGTGAGACTCTCATTTTTAAAATGGTTCGGAGAGGTGAATGTCCCAAATTTATTGTTGATAGACAATGA 1314 0.3858 MSSFFRVLIDEYATKLRIPSLFVSRFSCLTPKTVTLVCSSKRSWKVDIEEGDHKELYFKRGWNTFVEDNALETGEFVVFKFDGNSIFKANIFGKSYLRRKAPMSMPSFFKVLVDSKYTTKLRIPLLFLSKYSTLVPKRVTLIRASSNRSWKVDIEEEDDKRLYYKNGWSTFVEDNALEIAQFLVFKFDGDSTFKVKIYGNSACEKELENQPCINQNYCIQHYKQTTTRLHQETQREIDPIHVDRQKSGLNVEITEERVDHDDYHNSNQGTGAPQKEVEEEQSNGHIALQGESQREQSNEHIALQHESHSPIRNSGNGSTCEGPMLKESSEAPKLSPKKIPSFKILLQQAYAEKGVMCFPTEFFKKHMKNKRQEVEIETIDGVWKVTLLPHMKRTRTFARFSKGWSEFAKANHFKTGETLIFKMVRRGECPKFIVDRQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1854 437 SMART B3_2 342 437 IPR003340 GO:0003677
Prci13g1854 437 SMART B3_2 4 95 IPR003340 GO:0003677
Prci13g1854 437 SMART B3_2 108 201 IPR003340 GO:0003677
Prci13g1854 437 MobiDBLite consensus disorder prediction 256 335 - -
Prci13g1854 437 MobiDBLite consensus disorder prediction 307 323 - -
Prci13g1854 437 ProSiteProfiles B3 DNA-binding domain profile. 341 437 IPR003340 GO:0003677
Prci13g1854 437 PANTHER B3 DOMAIN-CONTAINING 3 97 - -
Prci13g1854 437 CDD B3_DNA 106 198 IPR003340 GO:0003677
Prci13g1854 437 SUPERFAMILY DNA-binding pseudobarrel domain 104 203 IPR015300 -
Prci13g1854 437 Pfam B3 DNA binding domain 342 433 IPR003340 GO:0003677
Prci13g1854 437 Pfam B3 DNA binding domain 6 89 IPR003340 GO:0003677
Prci13g1854 437 Pfam B3 DNA binding domain 108 198 IPR003340 GO:0003677
Prci13g1854 437 Gene3D - 325 435 IPR015300 -
Prci13g1854 437 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677
Prci13g1854 437 CDD B3_DNA 3 92 IPR003340 GO:0003677
Prci13g1854 437 SUPERFAMILY DNA-binding pseudobarrel domain 3 95 IPR015300 -
Prci13g1854 437 Gene3D - 1 96 IPR015300 -
Prci13g1854 437 Gene3D - 100 203 IPR015300 -
Prci13g1854 437 CDD B3_DNA 342 436 IPR003340 GO:0003677
Prci13g1854 437 ProSiteProfiles B3 DNA-binding domain profile. 106 201 IPR003340 GO:0003677
Prci13g1854 437 SUPERFAMILY DNA-binding pseudobarrel domain 338 435 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1854 Prci-Chr13 32970179 32973549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1854 15 96 B3 DNA Binding Superfamily AT3G18990 32.927 4.26e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci13g1854 B3 3.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1854 - - pcin:129291410 892.878