Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1853 ATGGCTTGTTTCTTCAAAGTCCTCCTTGGCGACTGGGAGAAAAAACTGCGAATCCCCACGTTGTTTGTCTCCTGCTTTTCCGAGCTTACACCTAAGACAATAATACTCATCCATCCTGTGTCAAAAAGATTATGGACCGTTGATATTGAGGAAGATGATGACAGAGACTTGTACTTCACAAGAGGTTGGGCTAAATTTGTGACAGAAAATGCTTTAGCGACTGGGGAATTTTTATTTTTCATGTTCGATGGGAATTCAAAATTTCAAGTTTGGATCTGTGGAAAATCTGCCTGCGAGAAGACGCTTGAGAATCTGGCATTGGAGGCACTGGTCAATCAGAAAAACCACAAACAACGTCATAATAAACAGACGGCAACTCGACATGGTCAAGAAACTCGGAAAGGAAAAGATCCAATGGATGTTGAAAGGCAAATGGGGAAGCTTGTTGATGCTGAGATAAAAGAGGAGAGAATAGATTTTGATGATTCTAGTACCTCTCGCCAAGAAACATGTGATGAAACGTGGGTACCCGATTCTGAAGCTGAAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGATTATGAAGCAGAAGAAGAAAGTGGTGAGTCTGAAGCTCTTCAGCCTGAACCTCGTGATCCAACCAGGAACATTGGTGGAGACCGCAATTTGGGTTGTAAGGTTCCTTCATTCAGTATACATCTCCAGCGTGCCTACGCAAAACAGGGTTGCATGTGCATTCCAACAGAGTTCTTCAAGAAGTACATAAGAAAAGAGATGCAAGAGGTGGAGATTGAGACAGTGAGAGGAGTATGGACAGTGACATTACTTCCCTTCAAGAAAAGGACAAGAACATTTGCTAGGTTCAGTAAAGGCTGGTCACAATTTGCCAAAAAGAATCACTTGAAGGAAGGACAAACTCTCATTTTTAAAATGATTCGTGGAGGTCATTGTCCTAAGTTCATCGTTTATAGGCAAGAAAAGACTATTAAGTAA 993 0.4129 MACFFKVLLGDWEKKLRIPTLFVSCFSELTPKTIILIHPVSKRLWTVDIEEDDDRDLYFTRGWAKFVTENALATGEFLFFMFDGNSKFQVWICGKSACEKTLENLALEALVNQKNHKQRHNKQTATRHGQETRKGKDPMDVERQMGKLVDAEIKEERIDFDDSSTSRQETCDETWVPDSEAEEEELEEEEEEDYEAEEESGESEALQPEPRDPTRNIGGDRNLGCKVPSFSIHLQRAYAKQGCMCIPTEFFKKYIRKEMQEVEIETVRGVWTVTLLPFKKRTRTFARFSKGWSQFAKKNHLKEGQTLIFKMIRGGHCPKFIVYRQEKTIK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1853 330 MobiDBLite consensus disorder prediction 113 220 - -
Prci13g1853 330 Gene3D - 213 326 IPR015300 -
Prci13g1853 330 SMART B3_2 230 326 IPR003340 GO:0003677
Prci13g1853 330 SMART B3_2 4 96 IPR003340 GO:0003677
Prci13g1853 330 SUPERFAMILY DNA-binding pseudobarrel domain 225 321 IPR015300 -
Prci13g1853 330 ProSiteProfiles B3 DNA-binding domain profile. 229 326 IPR003340 GO:0003677
Prci13g1853 330 Gene3D - 1 98 IPR015300 -
Prci13g1853 330 CDD B3_DNA 3 93 IPR003340 GO:0003677
Prci13g1853 330 ProSiteProfiles B3 DNA-binding domain profile. 1 96 IPR003340 GO:0003677
Prci13g1853 330 MobiDBLite consensus disorder prediction 175 203 - -
Prci13g1853 330 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Prci13g1853 330 CDD B3_DNA 228 324 IPR003340 GO:0003677
Prci13g1853 330 Pfam B3 DNA binding domain 235 322 IPR003340 GO:0003677
Prci13g1853 330 Pfam B3 DNA binding domain 14 94 IPR003340 GO:0003677
Prci13g1853 330 PANTHER B3 DOMAIN-CONTAINING 3 193 - -
Prci13g1853 330 MobiDBLite consensus disorder prediction 124 168 - -
Prci13g1853 330 Coils Coil 179 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1853 Prci-Chr13 32939205 32942036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1853 13 313 B3 DNA Binding Superfamily AT3G18990 23.780 3.02e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci13g1853 B3 6.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1853 - - pcin:129290266 640.188