Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1828 ATGCAAAGTTTTCTACAACAGATTCAGGTGATAATGTTAATGCAGAGCTCTCTTCCTAGTTCAATTGAAGTTGCTCTATTTCATGTATCTGATGAAGGAAAAGAAGATGCTTTATGTGACTGGATGCCTAGTGCTGAAACTTGGCAGGAGTGCCTGAAATGCAAAAAGTTCCCTCTTGACTGCTGTAGAAAAGTTGGAGCAATGCAAGGGCAAGAGGATAGAAGGAATGATGATGTTCCATGCAGCTCAAATTGTATAAGTAGCTTAGATCGACCGTCAACTGCCAGTACAATGACTGGAAATACTGTGCCAAATCTAGTTTACAGGAGAAAAAAGATACGGAAGAATTCAACTACACCCTTTTTAAAATTAGGACCTATGTCTATGCCAGCAAGTGCCAATTGCCATTCAGTCATAAACCCCTGTGCTCATAGATTATCATCAGAAGGTCAGCTGGTCAGTTCTCAAGTTGTGCAAGATGTTGAAATGGTTAAAGACTATGTTGTACCTGTTGTCTTACGTGAAGCAGCAATAGATCATGGTATACCAAAAAATTTAGGTATTGACAGCATTAATGATAGTTGCTCCATATCAAAATCAAATATGGAAATTGTTTCAGATTCCATAGAAACTGGAATGGATGACACTGGTGAATGCTCCTCATCTAGTGTACTAGTCATAGATGTCCCTTGGGAAGGCCTAGCAGCAAAGGATTTCTGCATCAAAATTCTAAGAGGCCATGGACTCCTTGGAGGAGATTCTCATGCTGATACTATAGCTTCTCAAGCACAGGCTGCTACCTCTGGTGATAATTGCAGTTCCCGGTCATGCAAAATATGTGGTCATTTAGACAGCTCATCGAACATGCTTATATGTGATCATTGTGAAGAGGCATTCCATCCATCCTGTCTCATTCCTCGCATGAAAAATTTACCAATTGATGAATGGTTTTGTCATTCATGCATAAAAAAGAAGCAAAAAGTACTTAAAGAGAGGATTATTAAAAGTTCACCAAATATCAACAGTGAAATGGAATTAGGCAGATCTACCTCAGAAAATGGAGGATTGAATCCTATACTGTTGATGTTGAATGACTCTGAGCCAAGTACAAGTGGCGTACGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCCTGAATGGTCAGGTCCAATAAGAAGCCACGAGGATGGGAGCCCAGCATTGCAGCAGGCAATACATGATGATGATGACCGTGCTGAACCAATGGAAATTGGCTGTTCAGAATCCTGTCTGCATCAAATGAATCTCAAAAGGGCAACTAGACTCAGCTCCATTGGTAATTGGCTTCAGTGTCAGGAGGTTGTAGATCGAGTCAAGGGAACTATATGTGGGAAATGGCGCAGGGCCCCTCTTTTTGAAGTCCAAACTGATAACTGGGAGTGCTTCTGTGCCATACATTGGGACCCAGCTCATGCTGATTGTGCTGTACCTCAGGAGCTGGAAACAGATCAAGTTCTGAAGCAACTGAAGTATATAGAAATGCTGAGGCCTCGACTTGCTGCGAAACGTTCAAAATTTGACAGGAAAAAGGGTGGTGAATGA 1578 0.4151 MQSFLQQIQVIMLMQSSLPSSIEVALFHVSDEGKEDALCDWMPSAETWQECLKCKKFPLDCCRKVGAMQGQEDRRNDDVPCSSNCISSLDRPSTASTMTGNTVPNLVYRRKKIRKNSTTPFLKLGPMSMPASANCHSVINPCAHRLSSEGQLVSSQVVQDVEMVKDYVVPVVLREAAIDHGIPKNLGIDSINDSCSISKSNMEIVSDSIETGMDDTGECSSSSVLVIDVPWEGLAAKDFCIKILRGHGLLGGDSHADTIASQAQAATSGDNCSSRSCKICGHLDSSSNMLICDHCEEAFHPSCLIPRMKNLPIDEWFCHSCIKKKQKVLKERIIKSSPNINSEMELGRSTSENGGLNPILLMLNDSEPSTSGVRVGKGFQAEVPEWSGPIRSHEDGSPALQQAIHDDDDRAEPMEIGCSESCLHQMNLKRATRLSSIGNWLQCQEVVDRVKGTICGKWRRAPLFEVQTDNWECFCAIHWDPAHADCAVPQELETDQVLKQLKYIEMLRPRLAAKRSKFDRKKGGE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1828 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 335 IPR013083 -
Prci13g1828 525 ProSiteProfiles Zinc finger CW-type profile. 434 494 IPR011124 GO:0008270
Prci13g1828 525 FunFam RING/FYVE/PHD zinc finger superfamily protein 265 343 - -
Prci13g1828 525 Gene3D - 438 503 - -
Prci13g1828 525 SMART PHD_3 276 322 IPR001965 -
Prci13g1828 525 Pfam PHD-finger 277 323 IPR019787 -
Prci13g1828 525 SUPERFAMILY FYVE/PHD zinc finger 273 328 IPR011011 -
Prci13g1828 525 FunFam uncharacterized protein LOC106759733 isoform X4 438 503 - -
Prci13g1828 525 ProSitePatterns Zinc finger PHD-type signature. 277 321 IPR019786 -
Prci13g1828 525 ProSiteProfiles Zinc finger PHD-type profile. 274 324 IPR019787 -
Prci13g1828 525 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 273 346 IPR047171 GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1828 Prci-Chr13 32452911 32471301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1828 277 352 C2H2 Transcription Factor Family AT3G01460 30.000 1.79e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci13g1828 PHD 2.6e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1828 - - gmx:100813057 589.341