Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1804 ATGCTGTTGGGGCAAGCTCCTCCTGCGAACTTCATAGCCAAACCCAATTGCATGGAATTGCAGATTCAAAGCCATGCGCGTCTCTTCTCCTTTGCTCAGACTTGTTTCTGTGACACCCCATGTACGAAAATGCAGCGAAGAGGTGTTGGAAATGCATTTCTCGTTAGAGCTGGCTATTCTCCCACGCCCAAAGATGTTCTCTCTTGGAACTCTAACACCGCCGACGATGGTTTGAGCTCGAATGTAGAGAATTTATCAGATATAAGCATAGTAGCTGAAGGCCTTGAGCGTGATTCAGTTCTTACAAATAGTGATTCTACAATAAAATCTAAGGCGAGGTTATCTGGAAGTTTTGGTAAACTGAAAGCACAGAAGGTTAAGGCCCTCATCCACAGAACTATTCACAAAAAGCAGGAAAGAAGCATTAATGATGATAACCTAGTTGTAGAACATCCAGAACTAGAAATAGAAGATGATTGGGAACAATATGAAAACAGTGCAAGTCAGGGATCTAATTCCCATGTAGGACGTCAGAATAAACCCAATAAATCTCAAAACAATGACATCAGAATAGCGAGTTCAGGTATATTAGTTGAAAGACATTCTGCCTCTCATTTAAAAGGATGGGGTTGTGAACAATCTTCACGTCCTTTTAGGACTGAATCACAAAAACTGGTAAAGGAGAAGAGAAAAGCATTGACTGACAATGACTTTTTCAGCCGAAAGTCTTTCAAAGATCTAGGTTACAGTGACTACATGATTGAATCTCTGCAAAAGCAAATTTTTCTCCGGCCTTCACATATACAGGCTATGGCATTTGAACCAGTATATACCGGAAAGAGTTGTATAATAGCTGATCAAAGTGGTTCTGGCAAGACTTTAGCATATCTTGCACCGATAATTCAGAAGCTTAGACAAGAAGAATTGGAAGGAATTGCCAATTTCTCTTCACAAGCTCCTCGAGTTGTTATATTGGCACCAACAGCTGAGTTAGCTTCTCAGGTGTTAGCTAATTGTCGATCAATGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTAACAGGTGGCTTTCGACAGAGAACTCAACTAGAGAATTTAGAGCAGGGTGTTGATGTTTTAATAGCGACACCTGGCCGTTTTATGTTCCTCATCAAGGAAGGCTTGTTGCAATTAACAAATTTAAGATGTGCGGTGTTAGATGAGGTAGATATCCTTTTTGGTGATGAGGATTTTGAAGTGGCGCTTCAGTGCTTGATTAATTCTTCACCAGTTGCCACACAATATTTATTTGTGACTGCAACTTTGCCAAAAGATATTTACAATAAACTAATTGAAGTTTTTCCTGATTGTCAAGTGATCATGGGACCCGGTATGCATCGGATAAGCTCTCGGCTTGAGGAGGTTTTAGTTGATTGCAGTGGGGCCGATGGGGAAGAAAAATCTCCTGATACTGCATTTCTTAATAAGAAAACAGCTCTTCTACAGATTGCAGAAGGAAGTCATGTCCCAAAAACCATTGTGTTCTGCAACAAAATTGAAACCTGCAGAAAAGTTGAGAATGCATTGAAACGTTTTGATAGGAAAGAGACTCGTGTACAAGTTCTACCTTTCCATGCTGCCATGACACAGGAATTACGGATTGCTAATATGGAAAAGTTTACACGTTCTCAGACAAAGGAAGTCTCCCAGTTTCTGGTTTGCACAGACAGAGCATCACGAGGGATTGACTTTAGTGGAGTGGATCATGTTGTACTTTTTGACTTCCCGCGTGATCCAAGTGAATATGTCCGCCGCGTCGGAAGAACTGCAAGAGGTGCTGCTGGGAAGGGCAAGGCATATATCTTTGTGGTTGGCAAGCAAGCCCTTGCACGTAAAATCATGGATAGGAATAAGAAGGGTCATCCTCTTCACGATGTTCCTTCAGCCTATGAGCTGATGAAGTAG 1947 0.414 MLLGQAPPANFIAKPNCMELQIQSHARLFSFAQTCFCDTPCTKMQRRGVGNAFLVRAGYSPTPKDVLSWNSNTADDGLSSNVENLSDISIVAEGLERDSVLTNSDSTIKSKARLSGSFGKLKAQKVKALIHRTIHKKQERSINDDNLVVEHPELEIEDDWEQYENSASQGSNSHVGRQNKPNKSQNNDIRIASSGILVERHSASHLKGWGCEQSSRPFRTESQKLVKEKRKALTDNDFFSRKSFKDLGYSDYMIESLQKQIFLRPSHIQAMAFEPVYTGKSCIIADQSGSGKTLAYLAPIIQKLRQEELEGIANFSSQAPRVVILAPTAELASQVLANCRSMSKSGVPFKSMVVTGGFRQRTQLENLEQGVDVLIATPGRFMFLIKEGLLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVATQYLFVTATLPKDIYNKLIEVFPDCQVIMGPGMHRISSRLEEVLVDCSGADGEEKSPDTAFLNKKTALLQIAEGSHVPKTIVFCNKIETCRKVENALKRFDRKETRVQVLPFHAAMTQELRIANMEKFTRSQTKEVSQFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEYVRRVGRTARGAAGKGKAYIFVVGKQVXLARKIMDRNKKGHPLHDVPSAYELMK 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1804 649 MobiDBLite consensus disorder prediction 163 190 - -
Prci13g1804 649 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 649 IPR001650 -
Prci13g1804 649 CDD SF2_C_DEAD 489 617 - -
Prci13g1804 649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 244 569 IPR014013 GO:0005524
Prci13g1804 649 CDD DEADc 253 442 - -
Prci13g1804 649 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 160 646 - -
Prci13g1804 649 Pfam Helicase conserved C-terminal domain 492 606 IPR001650 -
Prci13g1804 649 SMART helicmild6 517 607 IPR001650 -
Prci13g1804 649 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 242 270 IPR014014 GO:0003724
Prci13g1804 649 Gene3D - 210 454 IPR027417 -
Prci13g1804 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 618 IPR027417 -
Prci13g1804 649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 454 IPR014001 -
Prci13g1804 649 Gene3D - 482 646 IPR027417 -
Prci13g1804 649 MobiDBLite consensus disorder prediction 158 190 - -
Prci13g1804 649 SMART ultradead3 261 469 IPR014001 -
Prci13g1804 649 Pfam DEAD/DEAH box helicase 267 440 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1804 Prci-Chr13 31974191 31981537 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1804 243 628 Eukaryotic Initiation Factors Gene Family AT3G19760 27.436 7.98e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1804 K13179 - qsa:O6P43_017081 752.281