Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1800 ATGGAGATAGATCTTGAGCTGCCAACATGTGATCAGGGGAAGTCAGAATTTGGATCCTTTGGAAAAGGGGTGGCCGATTCTGCATGTGATATGCATATTGAGGAGCAACAATGTACTGATTGTCCAACAGTGACTGAACACTATGAGGAAGTCTCTTGTGGAAGTGCTTTGTCTTGTCCGGAGCAGGTGTATGCTATTAATAAAAATCCTATAAAGGAGCCTCAGAATGGCTTGGAATTTGAATCAAAGGAGCAAGCTTATTTTTTCTACAGAGAATATGCTCGCTCTGTGGGATTTGGTATCACAATAAAAGCCAGTCGGCGCTCAAAAAAGTCTGGTATGTTTATTGACATTAAAATTGCTTGTTCCAGGTTTGGAAGCAAGCGTGAGTCTGGTACAACTGTTAATCCACGATCATGTATAAAAACAAACTGTAAGGCTGGTTTGCATTTGAAAAAGAAGCCAGATGGTAAATGGATTATATATAGTATTGTGAAGGAGCATAACCATGAGATCTGTCCAGATGATTTTCTCAGGGGACGGCAAAAACAGCCCAGTGATGCAGCTTGTCCAAAGAAGGGTTTACAGTTGGCACTGGATGAGGAAGATGCTCGAGTGATGATTGAATATTTTTTGTCCATGCAAAATGATAATCCCAACTTCTTCTATGCTATAGACCTGGACCATAATAAGTGTTTGAGAAATGTGTTTTGGGTTGATTCAAAGGGTCGGCTTGATTATCAGAATTTCAATGATGTTGTTTTCATTGACACTTTTTACTTGCAAAACAAATATAAAATTCCATTTGTTCCTATTGTGGGAGTCAATCATCACTTTCAGTACATTTTGCTTGGATGTGCTCTGATTGGGGAGGTGACTACTTCTGCTTTTGTATGGCTATTGGAGGCATGGCTCAAAGCAATGAGTAGCCTAGCACCAAAAGCAATTATCACAGACCAAGAAAACTTCTTGAAAGAAGCCATTGTAGAAATGTTGCCACATACACATCATTTTTTCTGTATATGGCACATCTCAAAAAAAATTACTGAAAATTTGGGTTATATGATAGATCAAAATAGTAATTTTATGAAAAAATTCAGGAAATGTGTTCATGACTCTTTGTTTGATGAGCAGTTTGAAAAGAGATGGCGGAAACTGATCAATAGATTTGAACTAAAGGACAATGGATTGGTTCAATCATTGTTTGAGGATCGTAAAAAGTGGGTTCCAACATACATGCAGAATGTTTTTTTGGCTGGAATGTCCACAGCTGAGAGGTCTAAAAGTATAGTCTCATACTATGACAAGTATGTTTGTGTTGATTATACATTTAATGACTTTATTGAACAATATAAAGTTTTCTGTTCAGAGAGATTGGACATGGAAACCATAGCAGACTTTGAAACTAGCGAAAAGCAGCCTGCATTAAGATCCCTATTATCTTTTGAGAAGCAGCTCTTGGTGATTTACACAGATGCCATTTTTAGAAAATTTCAATCAGAGATATTGGGAGTGATGTCTTGCCGCCTTCTAAAGGAAAGAGAAGACAGTGCCAGTGTAACTTTTCGAGTTGAGGATTTGGAAGTAAAAAAGAAATTCATTGTGTCTTGGAAAGAATCAGAGTTGAATGTTTGTTGTTCATGTCATTTATTTGAGTACAAGGGTTTTCTATGTAGACATGCAATGCTTGTCATGCAGATTTCTGGTTTAACAAACATTCCATCCCATTATATTTTAAAACGATGGACAAGAGATGCAAAGGCGAATCAACTTGTGGGTGTTGATACAAGCCGCAGGCTTGCTGACAGAGTGCAACGTTTTAATGATCTATGTAGGAGGGCTATTATACTAAGTGAAATTGGGTCTTTATCTCCGGATACTTACCAAGTTGCATTTCAGGCACTGGAGGAAGTTTATAAAAACTGTGTGATTGCAAATAATTCGGTAAAAAGCATATTGGAACCCAACACCTCGGTACTTAATGGTGCTGTTGATGTTGAAGGGGAGAATTATCTCAGCCATACGACCAAGACAACTAAGAAAAGGAAGTCATATAATAAAAGGGGACGCTCTGAACCTGAAAGAACAAATATGATGATGCTGGATGCCTTTCAAAAGAGGGATCAAGTAAATACAAGAGCACACAACTTTGATAACTGTTACATTCCAAGACAGGACACGCACACAGTGGGTCAATTGCATTCTGTGCCAAGCCGTAGTCACCATTACAGGATGCAGCAGAGCATTCAAGGACTGCTGCAGGGACAACTCAGTCTTTCAACTTCAACAATTCATCATCATGCTTCTTTTGATCTTCAAGAAAATCTGGATGATATGGAATGA 2343 0.3828 MEIDLELPTCDQGKSEFGSFGKGVADSACDMHIEEQQCTDCPTVTEHYEEVSCGSALSCPEQVYAINKNPIKEPQNGLEFESKEQAYFFYREYARSVGFGITIKASRRSKKSGMFIDIKIACSRFGSKRESGTTVNPRSCIKTNCKAGLHLKKKPDGKWIIYSIVKEHNHEICPDDFLRGRQKQPSDAACPKKGLQLALDEEDARVMIEYFLSMQNDNPNFFYAIDLDHNKCLRNVFWVDSKGRLDYQNFNDVVFIDTFYLQNKYKIPFVPIVGVNHHFQYILLGCALIGEVTTSAFVWLLEAWLKAMSSLAPKAIITDQENFLKEAIVEMLPHTHHFFCIWHISKKITENLGYMIDQNSNFMKKFRKCVHDSLFDEQFEKRWRKLINRFELKDNGLVQSLFEDRKKWVPTYMQNVFLAGMSTAERSKSIVSYYDKYVCVDYTFNDFIEQYKVFCSERLDMETIADFETSEKQPALRSLLSFEKQLLVIYTDAIFRKFQSEILGVMSCRLLKEREDSASVTFRVEDLEVKKKFIVSWKESELNVCCSCHLFEYKGFLCRHAMLVMQISGLTNIPSHYILKRWTRDAKANQLVGVDTSRRLADRVQRFNDLCRRAIILSEIGSLSPDTYQVAFQALEEVYKNCVIANNSVKSILEPNTSVLNGAVDVEGENYLSHTTKTTKKRKSYNKRGRSEPERTNMMMLDAFQKRDQVNTRAHNFDNCYIPRQDTHTVGQLHSVPSRSHHYRMQQSIQGLLQGQLSLSTSTIHHHASFDLQENLDDME 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1800 780 MobiDBLite consensus disorder prediction 675 694 - -
Prci13g1800 780 Pfam FAR1 DNA-binding domain 89 173 IPR004330 -
Prci13g1800 780 ProSiteProfiles Zinc finger SWIM-type profile. 531 569 IPR007527 GO:0008270
Prci13g1800 780 Pfam SWIM zinc finger 539 565 IPR007527 GO:0008270
Prci13g1800 780 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 61 642 IPR031052 GO:0006355
Prci13g1800 780 SMART 26again6 544 571 IPR006564 GO:0008270
Prci13g1800 780 Pfam MULE transposase domain 253 347 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1800 Prci-Chr13 31962890 31969071 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Prci13g1800 MULE 6.5e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1800 - - gmx:100802811 1016.14