LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g1797	ATGTCTTCTTCCCGGCGCTCATCCTCCAAATCCAAATCCAAGTCTAAATACGAAGTTAATTGGACAAACGATGTGTTCCTGAGTTTCAGAGGAGAAGACACTCGGAAGGGTTTCATTTCTCATCTTCATTCATCTCTCAGTCATGCTGGAATTCACGCTTTTCAGGATGAAGATCACGAGTCATTAGAAAGGGGCGATGTGATTGCTGACGAACTGCATGAAAGCATCTCCAGCTCAACAATTTCAATCGTTGTTTTCTCAATCAACTATGGCGGCTCCGAATGGTGCTTAGGAGAACTGGAAAAAATCATGGAATGTCACAGAACTATCGGTCAGGTGGTTCTGCCTGTGTTCTATGATGTTGATCCGTCAGATGTACGCAAACAGAGAGGTCGTTTTGGGGAAGCATTCAATCGATGTTTACTGTACACCAGTAATGAGAAGATGTGGCGTTGGAGGCATGCTCTCACTGCAGCTGCCAATCTTGCCGGATTTGATTTGAAGAATTTCAGGAGTGAACGCTTGGTGATCAAGAATATTACTGACTCTATTTTGAGAATACTAGATAGCACCTACTTGTTTGTCGCTGACCATCCAGTGGGAGTAGATTCTCGTGTGCATGACATGATTGAACTGTTAACTGGTCCCTCAACTAAAGTTCTAATTGTTGGAATTTGGGGGATGGGAGGGATGGGCAAAAGCACTATAGCCAAGGCTGTTTACAATGAAATGTGTCATCATTTTGAGGGGAGCAGTTTCCTTGAAAATATCAGAGAAGTTTGGGAGCAAGACAATGGTCAAATATATTTGCAACAACAACTTCTTTCAGATATTCTTAAGACAGAAAAGATGAAATTTCATAGCTCTGCACGGGGCAAATCGCTGTTGAAAGAAAAACTTTGCCATAAGAAGACACTTGTTGTACTTGATGATGTGAATAATTTGGACCAGCTTAATGCATTGTGTGGAAGCCATGAATGGTTTGGTCCAGGAAGTAGATTAATCATTACAACTAGAGATGAGCATCTACTCAATGTCCTTAAAGTGGATAGCATATATAGAATGAAAGACATGAACACAAGTGAGTCTCTTGAGCTTTTTTGTTGGCATGCATTTAAGCAAGCAGATCCTATCAAAGAGTTCATTGAACTCACAAGACTTGTAGTTGCTTACTGTAGAGGATTACCACTAGCTCTTGAAGTACTTGGTTCTTATTTGTTTGATAGGAGAATTCAAGAGTGGGAAAGTGTATTGGAGAAACTAAAAAGAATTCCCAATGATCAAATACATAAGAAACTAAAGATAAGTTTTGATGGTTTAAATGATGATACGGAGAGAGAAATATTCCTTGATATATCATGTTTCTTTATTGGTATGGATAGAAACTATGTTATAAAAATATTAAATGACTGTGGACTTTTTGCTGAAATTGGAATAAGTGTCCTCACAGAGCGAAGCCTAGTAACTGTTGATATGAAAAATAGGCTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAAATCATTCGTAAAAAATCACCAAAAGAGCTTGAGAAGCGTAGTAGATTATGGTTCTATGAAGATGCCTATAGTGTGCTCAAGAAACATACTGGGACTATATCCATTGAGGGATTGGCTTTGAAGTTGCCCAGAAATAATAGAGTTTGTTTAAGCACCGAAGCATTTAAGGAGATGAAGAAGCTGAGATTGCTTCAACTTGATCATGTTCAACTGGAGGGAGATTTTGAATGTCTTTCGAAAGACCTCAAATGGCTCAGTTGGCGTAGGTTTCCATTGAGATATATTCCTGGCACTTTTCATCAAGGAAGTTTAGTTGCTATTGACTTAAAATACAGCAATCTCTATCAAATTTGGAAGGAACCCCAGTTGCTCAGCAAGTTGAAGGTCCTCAATCTGAGTCATTCCTTTTACTTGATCCAATCTCCTGATTTCTCAAATCTGCCTCATCTTGAAGTTCTAATACTCAAATATTGTTCAAGTTTGTCTATGGTGCACCACTCCATTGGAGATCTAAAAAATCTTACTTTGGTAAACTTGAAGGGCTGCACAAGCCTTACTAATCTCCCAACAACGATCTATAAGTCAAAATCTTTGAAGGTTCTCCTCCTGTCTGATTGTTTAAAGATTGATAAGTTGGAGGAAGACATAGGGCAGGTGCAATCTTTGACTACTCTGATTGCAAATAACACAGCAATAAGACAAGTTCCCTATTCAATTGTAAGATTGAAAAACATTGGGTATATATCTGTGTGTGGCTTTGAAGGTTTAACAGGTGATGTGTTTCCTTCTCTCATTTGGTCATGGATGTCACCAACAAATAATCCCTTGTCCTTTGTTCAAGCGTCTAAGAGCATGTCATCTCTCGTTTCTTCAGAAGCACAAGCTAATAGTTTTCATGATCTACCATCACTGCTTACTGGCCTTTCAAAGACTCGAAGCCTTCAGATTGAATCCTTCTCAGAGCTACAGCTTACTCAAGATATAGAAAGAGTTTTAGATTCAATATACGCCACAAATGGTGTTGAATTGGAAACCCCAAATGCATCACAAGTTTCATGCATGGAAACATCTACTTCAACTCCTTGTGGCAATCAGTTTCACATTTCAAGTTCGGAAAATTCCTTGAGATCCATTTTGATTCAAATGGGACAGAGCAGCCAAGTCACAATAACTCTTAGTGAGGCAATTTCGCAGGTATTAACTACTAACAGGTTTGGTGATTGTTTGCTCCCTGGTGACAAGTATCCTTATTGGTTATCTTACAAGGATGAAGGACCTTCAGTATTTTTTGAAGTTCCAAATCTTACAGGCTATAGCTTGAGAGGGATGACTTTGTGCATTATATATTCGTCTTTCCTGAACAAAGTAGCATTTGGATATCCAGTTGGTGTTCTGTTAATAAATTTCAGCAAGAGCACCATTCAGCTTTACAAGCGAGAAACACTAACATCCTTTGGGGATGAAGAATGGCAGGACATAACATCAAAGTTAGAACCTGGTGACAAAGTTGAGGTTATTGTAGTTTTTGGGTACAGATTCACTGTAAAGAAGACAGCAATGTATCTGATATATGCTGAATCAATGGAAGAAAACACAGTGCCTACCCAAGAACCTGATAAGAATGTTGTTTCTTCTAGCAGACATGAAATTACAAGGGTCGAGTCTAAGGCATTCCAATGTGATGATGAAGAGGAGGTACCTTTAAGTAGACCCAGAAAAACAACGAAAATGTGCAAGCTTCTTGAACCATAA	3276	0.3889	MSSSRRSSSKSKSKSKYEVNWTNDVFLSFRGEDTRKGFISHLHSSLSHAGIHAFQDEDHESLERGDVIADELHESISSSTISIVVFSINYGGSEWCLGELEKIMECHRTIGQVVLPVFYDVDPSDVRKQRGRFGEAFNRCLLYTSNEKMWRWRHALTAAANLAGFDLKNFRSERLVIKNITDSILRILDSTYLFVADHPVGVDSRVHDMIELLTGPSTKVLIVGIWGMGGMGKSTIAKAVYNEMCHHFEGSSFLENIREVWEQDNGQIYLQQQLLSDILKTEKMKFHSSARGKSLLKEKLCHKKTLVVLDDVNNLDQLNALCGSHEWFGPGSRLIITTRDEHLLNVLKVDSIYRMKDMNTSESLELFCWHAFKQADPIKEFIELTRLVVAYCRGLPLALEVLGSYLFDRRIQEWESVLEKLKRIPNDQIHKKLKISFDGLNDDTEREIFLDISCFFIGMDRNYVIKILNDCGLFAEIGISVLTERSLVTVDMKNRLGMHDLLRDMGREIIRKKSPKELEKRSRLWFYEDAYSVLKKHTGTISIEGLALKLPRNNRVCLSTEAFKEMKKLRLLQLDHVQLEGDFECLSKDLKWLSWRRFPLRYIPGTFHQGSLVAIDLKYSNLYQIWKEPQLLSKLKVLNLSHSFYLIQSPDFSNLPHLEVLILKYCSSLSMVHHSIGDLKNLTLVNLKGCTSLTNLPTTIYKSKSLKVLLLSDCLKIDKLEEDIGQVQSLTTLIANNTAIRQVPYSIVRLKNIGYISVCGFEGLTGDVFPSLIWSWMSPTNNPLSFVQASKSMSSLVSSEAQANSFHDLPSLLTGLSKTRSLQIESFSELQLTQDIERVLDSIYATNGVELETPNASQVSCMETSTSTPCGNQFHISSSENSLRSILIQMGQSSQVTITLSEAISQVLTTNRFGDCLLPGDKYPYWLSYKDEGPSVFFEVPNLTGYSLRGMTLCIIYSSFLNKVAFGYPVGVLLINFSKSTIQLYKRETLTSFGDEEWQDITSKLEPGDKVEVIVVFGYRFTVKKTAMYLIYAESMEENTVPTQEPDKNVVSSSRHEITRVESKAFQCDDEEEVPLSRPRKTTKMCKLLEP	1091

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g1797	1091	SUPERFAMILY	L domain-like	521	886	-	-
	Prci13g1797	1091	Pfam	NB-ARC domain	206	427	IPR002182	GO:0043531
	Prci13g1797	1091	Pfam	TIR domain	24	185	IPR000157	GO:0007165
	Prci13g1797	1091	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	24	809	IPR044974	GO:0006952
	Prci13g1797	1091	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	452	IPR027417	-
	Prci13g1797	1091	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	165	IPR035897	-
	Prci13g1797	1091	Gene3D	-	357	441	IPR042197	-
	Prci13g1797	1091	Gene3D	-	17	194	IPR035897	-
	Prci13g1797	1091	SMART	till_3	22	162	IPR000157	GO:0007165
	Prci13g1797	1091	ProSiteProfiles	TIR domain profile.	21	188	IPR000157	GO:0007165
	Prci13g1797	1091	FunFam	Disease resistance protein (TIR-NBS-LRR class)	19	190	-	-
	Prci13g1797	1091	Gene3D	Ribonuclease Inhibitor	542	718	IPR032675	-
	Prci13g1797	1091	Gene3D	Ribonuclease Inhibitor	719	845	IPR032675	-
	Prci13g1797	1091	SUPERFAMILY	"Winged helix" DNA-binding domain	428	535	IPR036390	-
	Prci13g1797	1091	Gene3D	-	195	352	IPR027417	-
	Prci13g1797	1091	PRINTS	Disease resistance protein signature	299	313	-	-
	Prci13g1797	1091	PRINTS	Disease resistance protein signature	392	406	-	-
	Prci13g1797	1091	PRINTS	Disease resistance protein signature	222	237	-	-
	Prci13g1797	1091	PRINTS	Disease resistance protein signature	653	669	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g1797	Prci-Chr13	31889196	31901897	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g1797	24	750	WRKY Transcription Factor Family	AT4G12020	30.708	5.07e-80	286

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g1797	-		-	gmx:100808685	1128.24