Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1594 ATGGGTTCTTCTTCTCTGAACACCCCATATAATAATCCATGGACGCCTGCAGATGCTGTACTTCGAGACTGCTCTCAAGGAATCTGCAGCTTTTATTGCCCTCAATGGTGCTCCGTCATCTACCCACCTCCTCCTGTGCCTTCTCTCACAGCCATCGGAGTAGCCGCCACCGCCGGTGACGATGACGCTGACGACTCTTCTTCATTCCGGCTCTCTCCCCTCATAGTTGCTCTTATCGGCATCTTGGCAAGTGCTTTCGTCTTAATCACTTACTACACCATCATCTCTCGTTTCTGTACGAGACGAACCCGGATCCACCAAAACGACGCCAACCAATGGATGAACGACAATGACGAGTCGGCGATTCAAGCCTCGTCTTCTTCCTCCAACACCGGTGGCTTAGACGAATCCCTGATCAGATCAATCACAGTCCGGAAGTACAAGAAAGGAGATGGATTAGTCGAAGGTACGGATTGCTCTGTGTGTCTCAGTGAATTCCAAGATTGCGAGAGCTTGAGATTGTTACCTAAATGCAACCACGCGTTTCATCTTCCTTGTATCGATACATGGTTGAGATCGCATTCGAGTTGTCCTCTATGCAGATCCAACATCGTCATATCCAACACTTCTCCGTCGTCTTCTTCTGGTAATTTGCCAAATCAAAGAGAGAATTCTCAGTTCCAGGAAGCTTCGCGAACACTAAGCGTGCACGTGTCTGCGTTGGAGCACCAGTACAGGAACGATACGGTGATAGTGATTCAGGGTTCAGAAGAGGAAATTCAAGTCGCTTTTTCAGGGAATTTGGAGGAGAGAAATCGGAGTGAATCGAATCAAGCAAGATTGTTGTTGGTTGCCGATATACTGAGGAACTGTGAAGATGATGATGAGGAAGTCGAGATTGGATCGTCAAAGGAAAATGGGAGAGAAGATAAGGGAAAAGTGAGATCGGAATGA 954 0.4759 MGSSSLNTPYNNPWTPADAVLRDCSQGICSFYCPQWCSVIYPPPPVPSLTAIGVAATAGDDDADDSSSFRLSPLIVALIGILASAFVLITYYTIISRFCTRRTRIHQNDANQWMNDNDESAIQASSSSSNTGGLDESLIRSITVRKYKKGDGLVEGTDCSVCLSEFQDCESLRLLPKCNHAFHLPCIDTWLRSHSSCPLCRSNIVISNTSPSSSSGNLPNQRENSQFQEASRTLSVHVSALEHQYRNDTVIVIQGSEEEIQVAFSGNLEERNRSESNQARLLLVADILRNCEDDDEEVEIGSSKENGREDKGKVRSE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1594 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Prci13g1594 317 Pfam Ring finger domain 158 201 IPR001841 -
Prci13g1594 317 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Prci13g1594 317 SMART ring_2 159 200 IPR001841 -
Prci13g1594 317 SUPERFAMILY RING/U-box 153 207 - -
Prci13g1594 317 MobiDBLite consensus disorder prediction 301 317 - -
Prci13g1594 317 FunFam RING-H2 finger protein ATL54 134 207 - -
Prci13g1594 317 PANTHER RING-H2 FINGER PROTEIN ATL16 65 276 IPR044600 GO:0016567|GO:0016740
Prci13g1594 317 MobiDBLite consensus disorder prediction 294 317 - -
Prci13g1594 317 CDD RING-H2_EL5-like 158 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1594 Prci-Chr13 25047675 25049117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1594 12 311 C3H Transcription Factor Family AT3G03550 45.062 7.91e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1594 - - pcin:129291142 592.808