Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1516 ATGTATGGAGGAGACGAAGTATCTGCAATTGTGATTGACTTGGGCTCCCACACTTGCAAAGCCGGTTACGCCGGCGAAGATGCTCCCAAGGCTGTGTTTCCCTCCGTTGTTGGAGCAATTGATCAAATGGACATTGATGAGCCTGATAATACTGAAAAGAACTCTGCTTCTTCTGCGGATTCAAAAAACAACACCAGAAATCCTGATTCTGACAAAACCAAAGGAAAGCGCAAATTGTATGTAGGATCACAGTCCTTGGGATACCGCAGAGACCATATGGAGGTGCTATCACCGTTGAAAGATGGAATCGTTGCTGACTGGGATATTGTTGATAGCATTTGGGATCATGCTTTCAGGGAATGCCTTTTGATCGATCCTAAAGAGCATCCAATGCTACTTGCAGAACCTTCTTCTAACACTCAACAACAGAGAGAAAGGACGGCAGAACTTATGTTTGAAAAGTACAAAGTACCTGCTTTGTTTTTGGCCAAGAATGCTGTTCTTACATCTTTTGCATCAGGTCGTGCCACGGCATTGGTTGTTGATGGTGGTGGAGGATCAACTACTGTTGCACCTGTCCATGATGGTTATGTTCTTCAAAAGGCAGTTGCAGCTTCTCCTATAGGAGGAGAGTTTCTTACGGATTGCTTGATGAAAAGTTTGGAAAGTAAGGGTATTGTGATTAAACCCCGGTATTCCTTTAAGAGAAAGGAAATCCGGCCTGGAGAGTTTCAGACTGTAGATGTTGATTTTCCCAATACAACTGAAAGCTACAAACTTTACTCCCAGAGGGTGATTGCTAGTGATATCAAGGAATGTGTTTGCCGAGCTCCTGATACCCCATATGATGAGAGTGCATACTCAAACATTCCGATGACCCCATATGAACTTCCTGATGGCCAGACAATTGAAATTGGAGCTGATAGATTCAAGATTCCTGATGTTCTTTTTAATCCATCTCTGGTCCAGACTATTCCTGGCATGGAGAGTTATGCAGAGATTGCTCCTTCAGTTCGAGGTCTGCCACAGATGGTTATAGAGAGTATTAACAAGTGTGATGTAGACATCCGAAGGGAATTATTTAGTAGCATACTGCTTGCTGGTGGCACAGCTTCAATGCAACAGTTGAAGGAACGCCTTGAGAAAGACTTGTTAGAGGAATCCCCTCAAGCTGCTAGAGTGAAAGTGCTGGCCAGTGGGAATGCAACTGAAAGGAGGTTCAGCGTTTGGATAGGTGGAAGCATATTGGCTTCTCTTGGCTCCTTCCAACAAATGTGGTTCTCCAAGACTGAGTATGAAGAGCATGGAGCTTCTTATATCCAAAGAAAATGCCCGTGA 1338 0.4402 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDEPDNTEKNSASSADSKNNTRNPDSDKTKGKRKLYVGSQSLGYRRDHMEVLSPLKDGIVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNTQQQRERTAELMFEKYKVPALFLAKNAVLTSFASGRATALVVDGGGGSTTVAPVHDGYVLQKAVAASPIGGEFLTDCLMKSLESKGIVIKPRYSFKRKEIRPGEFQTVDVDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLVQTIPGMESYAEIAPSVRGLPQMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKTEYEEHGASYIQRKCP 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1516 445 MobiDBLite consensus disorder prediction 45 76 - -
Prci13g1516 445 Gene3D - 1 183 - -
Prci13g1516 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Prci13g1516 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
Prci13g1516 445 CDD NBD_sugar-kinase_HSP70_actin 10 204 - -
Prci13g1516 445 SMART actin_3 7 445 IPR004000 -
Prci13g1516 445 Gene3D - 184 384 - -
Prci13g1516 445 Pfam Actin 4 444 IPR004000 -
Prci13g1516 445 FunFam actin-related protein 4 387 445 - -
Prci13g1516 445 Gene3D Actin; Chain A, domain 4 210 323 - -
Prci13g1516 445 Gene3D - 390 445 - -
Prci13g1516 445 FunFam Actin-related protein 4 1 183 - -
Prci13g1516 445 PANTHER ACTIN 9 438 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1516 Prci-Chr13 21221317 21244787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1516 1 444 Cytoskeleton Gene Families AT5G09810 36.913 4.73e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1516 K11340 - gmx:100785066 828.935