Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1502 ATGCCACCGAGGACGGTGAAGAGAGGGGCTGCAGCTGCGGCCAGGAGAGGGGGAAGAGGTGGCAGAGGAACGCCGAAGGCTGCCCAGAATCAGCAGAATCTTGATTTTGTGGAAGAGATTGTGAAGCATGAAGAAAAGCCGGTCGTTGAGGAGAAGCCCGTCGTCGAGGAGAAACCGATCGTTGAGGAGAAGCAAGTGGGTATTGATATGAATCAGATGGCTTTTGATATTAACCAAGTCGCTTCAGAGGCTGAAGAAGCGAATCTTGTCACAAATGGGTCGGCTGCTGTGAAAAACAATGAAGAGGAGGGTAAGGAGTCGATAGATGAATATGAAAAAGATGAACGCTTAGATCTGGAGGATAATGATCCAGAATATGAACCTGAGGAGTATGGGGGGGTTGACTATGATGAGAAGGAAATTGAGCAAGATGACATTCAGGAGGTAGGAGAGGAGATCGAGGAAGATCCTGATGAGAATTTAGGTGAAGAAGAGGGTGATATGGTTGAGGAGGAAGTGGAGGACGTTCATGGAGAACTTGAGGGTGAAGAGGATGATGAGAATCCTGGAGAGGAGCATGAGCGTGAGGAGATTGCCGATGTAGAGGAAGAGGAACACCATGAAGGTTTGAAGGAGAGGAGAAAGCGCAAGGAATTTGAAGTATTTGTTGGAGGCCTAGATAAAGATGCTACTGAGGATGACCTGAGGAAGGTGTTTAGTGCAGTTGGTGAGGTTATTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAATAAGGGTTTTGCATTCTTGCGTTTTGCAACTGTGGAGCAAGCAAAACGAGCTGTAACAGAGCTGAAAAATCCAGTGATTAATGGCAAACAGTGTGGGGTAACCCCCAGTCAGGACAGTGATACCCTCTTTTTGGGTAACATATGCAAGACTTGGACAAAGGAAGCTTTAAAGGAGAAGCTAAAGCATTATGGAGTGGACAATGTGGAGGATCTGACTTTAGTAGAAGATAGTAATAATGAAGGAATGAATCGTGGATTTGCTTTTTTAGAATTTTCATCTCGGTCAGAGGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCAGGTGATGAGATTATGGCACAGGTTAAAACTGTATTTATTGATGGTCTGCCTCCATCATGGGATGAGGATCGTGTCCGGGGTCTTCTTAAGAGATATGGGGAGATTGAGAAGATTGAGCTTGCCAGAAACATGCCGTCTGCTAAGAGGAAGGACTTCGGATTTGTTACATTTGATACCCATGATGCTGCTGTGACATGTGCCAAAAGCATTAATAACTCTGAGATAGGTGAAGGAGATAGTAAGGCAAAAGTTAGGGCAAGATTATCAAGACCACTTCAGAGAGGCCATGGAAAACATGGTGGTCGTGGGGATTTTCGGTTAAGTCGTGCTTCTGGAAGAGCCACAAGACCATCATGGAGTCGACCAGCACCTCGTTTACCTGCCCGTGGTGTAAGGGGCATTAGTAGTCGTGTTCCTCTGGTCAGGCCTGTTAGTGTGAGAGATAGACGTCCAGCCATGCCAATGACAGTGAGGGCTAGGCCTGTGGCTCCTCCAGCTAGATCCTATGATAGGAGACCAGCTGTTCCTGCATATCCAAAAAGTAGTATGAAGAGAGATTATGGCCGGCGTGAGGAGTTACCACCGCCAAGAAGTAGAGTAGCTGCAGATTACGGCTCTAGGGTGGCCTCTGAGAGACGCCCATCTTATAGGGATTATCCTGCCCGTGGCCCTACCTACTCTGAGCTTCCTAGAAGTACTTCATCTCGTGTGGCACCTCGGAGGGGTTATGTGGATGAAGGCTATGTCCAAAGATTTGAGAGGCCTCCTCCTCCTCCACCTCCACATCCAAGTTACCGTGAAGGACGTCCTCGTGATTATGATACTCTCTCTGGCTCGAAACGTCAATATGCTGCCATGGATGATGTTCCTCCACGATATGCAGAAAGTGGTGCTCGCCAATCAAGAGCTCGATTGGATTATGACTATGGTGGTAGTACTTCACAGTATGGGGATGCTTATGGTGATAGACTTGGAAGATCTAGCATGGGCTATAGTGGTGGTAGGAGTTCTATGTCAAGTCAGGACTCACATGGGATGTATAGTAGTCGTCAAGGCATGAGTTATGGTGGAGGTTCTTTTGGCAGTAGTGATGTTGGTGGTATGTACTCCTCCAGTTATGGTGGTGAATACATTTCTCGTGGAAATGATGTTGGTAGTGGCTCATACTCATCGCTATATCCTGGCAGAGGTGTGGGTGGTAGTAGCAGTTACATGGGTGGTAGTGGGTCTGGGTCTTATTATTAA 2406 0.4688 MPPRTVKRGAAAAARRGGRGGRGTPKAAQNQQNLDFVEEIVKHEEKPVVEEKPVVEEKPIVEEKQVGIDMNQMAFDINQVASEAEEANLVTNGSAAVKNNEEEGKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEQDDIQEVGEEIEEDPDENLGEEEGDMVEEEVEDVHGELEGEEDDENPGEEHEREEIADVEEEEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGEVIEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSEAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRGLLKRYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGGRGDFRLSRASGRATRPSWSRPAPRLPARGVRGISSRVPLVRPVSVRDRRPAMPMTVRARPVAPPARSYDRRPAVPAYPKSSMKRDYGRREELPPPRSRVAADYGSRVASERRPSYRDYPARGPTYSELPRSTSSRVAPRRGYVDEGYVQRFERPPPPPPPHPSYREGRPRDYDTLSGSKRQYAAMDDVPPRYAESGARQSRARLDYDYGGSTSQYGDAYGDRLGRSSMGYSGGRSSMSSQDSHGMYSSRQGMSYGGGSFGSSDVGGMYSSSYGGEYISRGNDVGSGSYSSLYPGRGVGGSSSYMGGSGSGSYY 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1502 801 Gene3D - 386 505 IPR012677 -
Prci13g1502 801 CDD RRM_SF 301 379 - -
Prci13g1502 801 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 383 IPR000504 GO:0003723
Prci13g1502 801 MobiDBLite consensus disorder prediction 113 199 - -
Prci13g1502 801 MobiDBLite consensus disorder prediction 772 801 - -
Prci13g1502 801 Gene3D - 159 294 IPR012677 -
Prci13g1502 801 FunFam Heterogeneous nuclear ribonucleoprotein Q 300 382 - -
Prci13g1502 801 MobiDBLite consensus disorder prediction 538 663 - -
Prci13g1502 801 MobiDBLite consensus disorder prediction 476 515 - -
Prci13g1502 801 FunFam RNA recognition water-stress protein1 386 507 - -
Prci13g1502 801 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 396 478 IPR000504 GO:0003723
Prci13g1502 801 MobiDBLite consensus disorder prediction 1 32 - -
Prci13g1502 801 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 398 463 IPR000504 GO:0003723
Prci13g1502 801 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 367 IPR000504 GO:0003723
Prci13g1502 801 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 289 IPR000504 GO:0003723
Prci13g1502 801 Gene3D - 299 382 IPR012677 -
Prci13g1502 801 SUPERFAMILY RNA-binding domain, RBD 297 463 IPR035979 GO:0003676
Prci13g1502 801 MobiDBLite consensus disorder prediction 89 213 - -
Prci13g1502 801 MobiDBLite consensus disorder prediction 700 737 - -
Prci13g1502 801 MobiDBLite consensus disorder prediction 717 737 - -
Prci13g1502 801 MobiDBLite consensus disorder prediction 570 584 - -
Prci13g1502 801 SUPERFAMILY RNA-binding domain, RBD 220 323 IPR035979 GO:0003676
Prci13g1502 801 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 150 299 - -
Prci13g1502 801 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 297 IPR000504 GO:0003723
Prci13g1502 801 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 793 - -
Prci13g1502 801 CDD RRM_SF 221 292 - -
Prci13g1502 801 CDD RRM_SF 398 463 - -
Prci13g1502 801 SMART rrm1_1 397 472 IPR000504 GO:0003723
Prci13g1502 801 SMART rrm1_1 220 293 IPR000504 GO:0003723
Prci13g1502 801 SMART rrm1_1 300 379 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1502 Prci-Chr13 20520990 20526590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1502 214 477 Eukaryotic Initiation Factors Gene Family AT1G49760 23.411 3.42e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1502 - - gmx:100779340 975.696