Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1498 ATGAATTCGGAAACTTGGGTCACTTCTCTCTCATGTTCATCCCCTGTGAAACAAGCCCAAGGTGCTACTTTTCTCTCGACCCTGTCTCAGTGGCTAGAATTTGTCTTCCTCTCTCCATGTCCTCAGAGAGCTCTCTTGTCCGCCATTGATGTTGTCCTCATCCTCGTCCTCTTCGTGCTTGCCGTGAAAAAGCTCTGTTCTAGGTTCACCTCTAATGGCGGCGGCGAGCCAGCTTCTGAACTTGACAAGCCCCTTATCAGACATAACAGAGATTCCATCAGAACGACAACGTGGTTTAAGCTAACTCTTATTGTGACGGTTGTTTTGACCGTACTATACGCTGTTGCGAGTGTTCTGGTATTTATCAGAGACAACCGAGTTCCATGGAAGCTAGTTGATGGATTATTTTGGTTCGTTCAAGCTGTGACTCATGCGGTTCTGGCAATCTTAATTATTCATGAAAAGAGGTTTCAAGCTGTTTCTCATCCAATTACACTTCGAATCTTCTGGTTTGCAAACTTCATTCTCACTTCTCTGTTGGTTGTTTCTGGGGTTATACGTTTGGTTTCTGTGGAAGCAATTGAAGGACGCTTCGACTTTAGGAATGATGATACTGTCTGTTTCATTTCCTTTCCTCCGTCACTTTTTCTCTTTCTTGTTGCCATTAAAGGATCTACTGGCATCAGCTTCACGCAGGAAACCCAATCGCTAATTGATGGGGAAACTGATATCACAAACGTGACTGGTTTTGCGTCAGCGTCTTTAGCATCAAAGGCCTTTTGGCTATGGATAAATCCATTGTTGAGTAAAGGGTACAAGTCGCCTTTGAAGATTGATGAGGTCCCAACACTTTCCCCGGATCATAGAGCTGAAAGAATGTCAGTATTGTTTGAACAGAAATGGCCTAAGCCACAAGAAAGGTCGAAGCATCCTGTTCTAATCACATTGCTTCGATGCTTCTGGATGGAAGCAGCATTCACTGCTTTCCTTGCGGTCGTTCGACTCAGCGTTATGTTCATAGGTCCAGTTCTTATCCAAAGCTTCGTTGATTTCACAGCTGGTAAGAGAAGCTCTGTATATGAAGGCTACTACCTCGTGTTGATCCTCCTCGTTGCGAAATTTATAGAAGTTTTAGCTACTCATCATTTCAACTTCAACTCTCAGAAGCTAGGAATGCTAATCAGATGCTCTCTCATTACCTCATTGTACAAGAAAGGGCTAAGGTTGTCTTGTTCCGCACGACAAGATCATGGTGTTGGAACTATAGTGAATTATATGGCTGTGGATGCACAACAACTTTCTGATATGATGTTGCAGCTTCATGCTATCTGGATGATGCCATTTCAAGTTGGAATTGCCTTATTTCTGCTTTACAAATACTTAGGTGCTGCAGTGGTCACAGCTTTATTTGGGATTGTGGGGGTTCTTGTGTTTATCATATTTGGTACTCGAAGAAACAACCGTTTCCAGTTCAATGTGATGAGAAACCGCGATTCGAGAATGAAAGCTGTGAATGAGATGCTAAATTACATGCGAGTAATCAAGTTTCAAGCATGGGAAGAGCATTTCAACAAGAGGATTATGGGTTTTCGTGAGTCAGAATTTAGCTGGCTTTCTAAGTTCTTGTATTCAATTTCTGGGAATATTATTGTGATGTGGAGCACACCACTGTTGATATCAACTCTAACGTTTTGGACAGCAATTTTGCTTGGTGTTCCACTTGATGCAGGGACAGTTTTCACCACAACAACAATCTTTAAAATATTGCAAGAACCCATTAGGACGTTTCCACAATCAATGATCTCTCTTTCACAAGCGACGATATCACTTGGGAGGTTGGATAGGTACATGATGAGTAAGGAATTATCAGATTATTCTGTAGAGAGAGAGGAAGGGTGCGATGGACAAACTGCTGTAGAGGTGAAAGATGGCATTTTTAACTGGGAGGATGATAGTAAGGGGGATTATGACTTGAAAAATATTGATTTAAATATAAAAAAGGGTGATCTTACAGCTATTGTTGGGACTGTTGGCTCTGGAAAATCTTCTCTCTTAGCATCAATTCTTGGTGAGATGCACAAAGTTTCTGGGAAGATCCGGGTTTGTGGCAGTACAGCATATGTAGCTCAAACATCATGGATTCAAAATGGGACAATTCAGGATAACATCCTGTATGGATTACCATTAGATAGACAGAAGTACAATGAAGTTGTGAGAATCTGCTGCTTGGACAAGGATTTGGAAATGATGGAGGATGGGGATCAGACAGAGATTGGAGAGCGTGGTATCAATCTCAGTGGAGGACAGAAGCAGCGAATCCAACTTGCTAGGGCTGTATATCAAGACTGTGATATCTATCTTCTGGATGATGTTTTCAGTGCAGTTGATGCTCATACTGGCTCTGCAATATTCAAGGAATGTGTTAGGGGAGCTCTGAAAGGAAAGACTATTATTCTTGTTACACACCAAGTAGACTTCTTGCATAATGTTGATCTTATACTGGTGATGAGAGATGGAATGATAGTTCAATCAGGGAAGTATAATGATCTCTTAAATTCTGGAATGGATTTTGGAGATTTGGTAGCAGCACATGAAACTTCCATGGAACTTGTAGAACAAGGCAAAGACATGCCTGGTGAAAATTCCCCTAGACCATCCAAATCTCCGAGATCACTAAAGCCAACTTCTAGTTTTAGAGAAAGCAATGGTGATAGCGATTCACTTGACCAACCCAAGGCTGGCAAGGAAAATTCTAAACTCATCAAAGATGAAGAGAGGGAAACTGGCAAAGTGAGCTTGCATATCTATAAGTTGTATTGTACTGAGGCTTATGGGTGGTGGGGCATTATAGGAGTAATTCTCATTTCTTTGTTATGGCAAGCATCCTTGATGGCTGGTGATTATTGGCTGGCATATGAAACCTCAGAAGAGCAAGCTCGAATCTTTAACCCGTCTCTGTTTATTTCCATCTACGCCATTATTGCTGCAGTTTCAGTTGTTTTGGTGGTCATAAGATCCTTTTCTGTTACCATTTTGGGGCTTAAGACAGCACAAATTTTCTTCTCTCAGATTCTTAATTGCATCCTGCATGCACCCATGTCTTTCTTTGACACTACGCCTTCTGGAAGAATTTTAAGTAGGGCATCCACTGATCAGACTAATGTTGATCTCTTTCTTCCATTTTTTATGGGTGTTGTGATTTCCATGTACATCACAGTACTTAGCATCTTCATTGTCACGTGTCAAAATTCATGGCCAACAGTTTTCTTGCTGATTCCTCTTATCTGGTTGAATATATGGTATCGGGGTTATTTCCTTTCATCATCTCGTGAGTTGACTCGCTTGGACTCAATAACAAAAGCACCTGTTATTCATCACTTCTCAGAGAGCATTTCAGGGGTCATGACAATCCGTGCCTTCAAAAAGCAGAGAAATTTTTGTGAAGAAAATGTTAAACGAGTGAATGAAAATCTGCGCATGGATTTCCACAACAATGGTTCCAATGAGTGGTTGGGTTTTCGCTTAGAATTACTTGGAAGCTTGGTCTTTTGTATTTCTACAATGTTCCTGATTATATTACCGAGCAACATCATAAAGCCAGAAAATGTCGGTTTATCGCTCTCTTATGGATTGTCCCTGAATGCTGTGTTATTCTGGGCCATATACATGAGTTGCTTCATTGAGAACAGAATGGTATCTGTTGAGAGGATTAAGCAGTTCACAAAAATTCCATCAGAGGCAGCATGGCATATTCAAGATCGCCTTCCTCCTCCGAACTGGCCTGCCCACGGCAATGTTAATATCAAAGAGTTGCAGGTTAGGTATCGTCCCAACACTCCTTTGGTTCTGAAAGGCATCACTTTAAGCATTAGTGGGGGAGACAAGATTGGCGTTGTTGGTAGAACAGGAAGTGGAAAATCAACTTTAATCCAAGTTTTCTTCAGGCTGGTTGAACCTTCAGGAGGTAGAATAATCATTGATGACATCGACATAACTGCCTTAGGCCTTCACGATCTCAGGTCTCGTTTTGGCATCATTCCCCAGGAACCTGTTCTTTTTGAGGGCACTGTCAGAAGCAATATTGACCCAACTGGACAATATTCAGATGAAGACATATGGAAGAGCTTGGAACGCTGTCAACTAAAAGATGCTGTAGCTTCCAAGCCTGAGAAACTGGACTCTTTAGTGGTTGATAATGGAGAGAATTGGAGTGTGGGACAGAGGCAATTATTGTGTTTGGGGAGGGTTATGCTGAAGAGAAGTCGTCTCTTGTTCTTGGATGAAGCAACAGCTTCTGTGGATTCACAAACTGATGCTGTGATTCAAAAGATAATCAGAGAGGACTTTGCAGCATGTACCATCATTAGCATTGCTCACAGAATACCAACAGTCATGGACTGTGATAGAGTTCTGGTCATCGATGCAGGGCTAGCAAAAGAATTTGATAAACCCTCCAAGTTGCTTCAGAGGCCATCATTATTTGGAGCATTAGTTCAAGAATATGCCAATCGCTCCTCAGAACTCTAG 4527 0.4171 MNSETWVTSLSCSSPVKQAQGATFLSTLSQWLEFVFLSPCPQRALLSAIDVVLILVLFVLAVKKLCSRFTSNGGGEPASELDKPLIRHNRDSIRTTTWFKLTLIVTVVLTVLYAVASVLVFIRDNRVPWKLVDGLFWFVQAVTHAVLAILIIHEKRFQAVSHPITLRIFWFANFILTSLLVVSGVIRLVSVEAIEGRFDFRNDDTVCFISFPPSLFLFLVAIKGSTGISFTQETQSLIDGETDINXNVTGFASASLASKAFWLWINPLLSKGYKSPLKIDEVPTLSPDHRAERMSVLFEQKWPKPQERSKHPVLITLLRCFWMEAAFTAFLAVVRLSVMFIGPVLIQSFVDFTAGKRSSVYEGYYLVLILLVAKFIEVLATHHFNFNSQKLGMLIRCSLITSLYKKGLRLSCSARQDHGVGTIVNYMAVDAQQLSDMMLQLHAIWMMPFQVGIALFLLYKYLGAAVVTALFGIVGVLVFIIFGTRRNNRFQFNVMRNRDSRMKAVNEMLNYMRVIKFQAWEEHFNKRIMGFRESEFSWLSKFLYSISGNIIVMWSTPLLISTLTFWTAILLGVPLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQATISLGRLDRYMMSKELSDYSVEREEGCDGQTAVEVKDGIFNWEDDSKGDYDLKNIDLNIKKGDLTAIVGTVGSGKSSLLASILGEMHKVSGKIRVCGSTAYVAQTSWIQNGTIQDNILYGLPLDRQKYNEVVRICCLDKDLEMMEDGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSAIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMRDGMIVQSGKYNDLLNSGMDFGDLVAAHETSMELVEQGKDMPGENSPRPSKSPRSLKPTSSFRESNGDSDSLDQPKAGKENSKLIKDEERETGKVSLHIYKLYCTEAYGWWGIIGVILISLLWQASLMAGDYWLAYETSEEQARIFNPSLFISIYAIIAAVSVVLVVIRSFSVTILGLKTAQIFFSQILNCILHAPMSFFDTTPSGRILSRASTDQTNVDLFLPFFMGVVISMYITVLSIFIVTCQNSWPTVFLLIPLIWLNIWYRGYFLSSSRELTRLDSITKAPVIHHFSESISGVMTIRAFKKQRNFCEENVKRVNENLRMDFHNNGSNEWLGFRLELLGSLVFCISTMFLIILPSNIIKPENVGLSLSYGLSLNAVLFWAIYMSCFIENRMVSVERIKQFTKIPSEAAWHIQDRLPPPNWPAHGNVNIKELQVRYRPNTPLVLKGITLSISGGDKIGVVGRTGSGKSTLIQVFFRLVEPSGGRIIIDDIDITALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYSDEDIWKSLERCQLKDAVASKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFLDEATASVDSQTDAVIQKIIREDFAACTIISIAHRIPTVMDCDRVLVIDAGLAKEFDKPSKLLQRPSLFGALVQEYANRSSEL 1509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1498 1509 CDD ABC_6TM_ABCC_D2 950 1242 IPR044726 GO:0140359
Prci13g1498 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 951 1230 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci13g1498 1509 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Prci13g1498 1509 CDD ABCC_MRP_domain2 1265 1485 - -
Prci13g1498 1509 FunFam ABC transporter C family member 10 309 622 - -
Prci13g1498 1509 Pfam ABC transporter transmembrane region 329 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci13g1498 1509 Pfam ABC transporter transmembrane region 983 1203 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci13g1498 1509 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 252 1503 - -
Prci13g1498 1509 CDD ABCC_MRP_domain1 640 840 - -
Prci13g1498 1509 SUPERFAMILY ABC transporter transmembrane region 308 618 IPR036640 GO:0005524|GO:0016020
Prci13g1498 1509 FunFam ABC transporter C family member 4 623 883 - -
Prci13g1498 1509 Gene3D ABC transporter type 1, transmembrane domain 307 615 IPR036640 GO:0005524|GO:0016020
Prci13g1498 1509 Pfam ABC transporter 1284 1432 IPR003439 GO:0005524
Prci13g1498 1509 Gene3D ABC transporter type 1, transmembrane domain 913 1248 IPR036640 GO:0005524|GO:0016020
Prci13g1498 1509 MobiDBLite consensus disorder prediction 906 922 - -
Prci13g1498 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1259 1500 IPR027417 -
Prci13g1498 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 326 606 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Prci13g1498 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 864 IPR003439 GO:0005524
Prci13g1498 1509 MobiDBLite consensus disorder prediction 872 922 - -
Prci13g1498 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1269 1501 IPR003439 GO:0005524
Prci13g1498 1509 Coils Coil 1138 1158 - -
Prci13g1498 1509 Pfam ABC transporter 659 792 IPR003439 GO:0005524
Prci13g1498 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 862 IPR027417 -
Prci13g1498 1509 Coils Coil 1499 1509 - -
Prci13g1498 1509 CDD ABC_6TM_ABCC_D1 327 614 IPR044746 GO:0140359
Prci13g1498 1509 SUPERFAMILY ABC transporter transmembrane region 947 1247 IPR036640 GO:0005524|GO:0016020
Prci13g1498 1509 Gene3D - 616 882 IPR027417 -
Prci13g1498 1509 MobiDBLite consensus disorder prediction 885 905 - -
Prci13g1498 1509 FunFam ABC transporter C family member 3 1250 1501 - -
Prci13g1498 1509 SMART AAA_5 668 849 IPR003593 GO:0016887
Prci13g1498 1509 SMART AAA_5 1293 1478 IPR003593 GO:0016887
Prci13g1498 1509 FunFam ABC transporter C family member 5 913 1248 - -
Prci13g1498 1509 Gene3D - 1251 1499 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1498 Prci-Chr13 20231250 20245095 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1498 651 857 Calmodulin-binding Proteins AT2G36910 30.962 1.26e-23 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1498 - K05666 gmx:100793361 2346.24