Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1452 ATGGTGTGGGTTGATGCTAAAATAAGTTCTATACAGAGAAAGCCACATGAACCTGGGTGCTTGTGTCAATATTATGTGAACGTTTATGTTAATCAAGGTTGTGTTGGTTCTGAGGTAAGAACTCTGAGTAAGGAGATCAAAGTAGTTGGAATAAATCAAATATCTATTCTCCAAAGGCTTGAGCATAGTCCTTGTGAAGATCAGCACTATCGATGGGATTCATCTGAGGATTGGCATGCAGTGCCACAAACTAAATTGCTTTCAGGGAAATTTCTATCTGATATTTCATGGTTAATTGTCTCATCTGTTTTAAAGCAGGTTTCATTTTGTGTGAGATCTGCAGGTAACAAGATTGTGTATCAAATCATGGGGGTGGATGATAATAGCTTCCTGTTGGATGTTGTAAATTTCAGAATAGACAACAGCATGTTAGTACCCATTGTTTCCCAGGTTATTTCATCTGACACTGATAAGGTTGACAATACAGATGACTCCCATAAAGATAAAGCATTTTCATCTTATAATCCTGAGGGTTTGCGTCGTTCCAAACGTCGAAATGTACAACCTGAGCGCTACCTTGGCTGTGATGAGACTCATGTGTTGGATGTTGGTTTTGTTCGAACCAGGCCATACAAGATGGACATTCGAAAAGATGATGGAGAGGATGATGAATTGTCAATGCCATTATCATCCCTGATTGGTTTGCAAAAAAATTATGGAGTGATGGATGATGGCAGTGGACTGAAGTTTAATAAGATGACGTCTTACAACAAACTTAAAGTGTATAAAAGGAGGCCTAAGTCTAAGGAGGTGAATTCAGGTGATGTCAATATAAATGAAATTCAATCTCAACTTGCCATTGTTCCTGTTCCTCAAGAATGTGATCCTATTAACATTGAGCATTTTGATTCCAATGCCAAGGTCTCTAAATATTACACACAAAGAAATGTTGAATGTCCTACCAAACATTATCATGTGATGGGCAGTCCTGAACCAAAGAGGAATAATATGGATTTGTTAACTTTTGAATCCTATAATCATCCTTCAAAGATTCCAGGTCTTGAAGATTGTGTTGAAGAGATTGATGATATTGCTTCCCGATGTCATTATAATCTTGGCACCCCTAAAATAAAGAGGAAGAATTCATTTGGTTTGAATGATACGGATTTTGAAAGCAGATGGGAAGGGATAAATTCTGATAAAGCAGTTCAAGGGAAAAAATATCATTCAACAATTTCAAGAGGCAAACAATCTGATGAAGAAAGAACTTATAAAGCTAGGTCCTTAAGTGCAGGTGCCTACAAGGAATTGATAGACTCATATTTAAAGAATATGAATGCAAAACCATCTGAAGCAGAGCCACCTATTACTGAGCAGTGGATACAATTCAAGGAAACAAGTAACTTAGGACAAAAGGGGGAAACAAAGTCACCCCAAATTGAGGATGAGAAAGAAACCGATGAACTAGATATATTGTGGAGAGAAATGGAAGTTTCACTGGCATCAAGTTATGTTGAAGAAGACACAGAGGGTTCAAGTGCTGCAGTTTTTACTGAGACCTGGGAAAAAACTGATTCACTTTGTCGCCATGATTATAGAATGAATGAAGAAATTGGAATTTACTGTCTATTATGTGGCATTGTCAGTGCTGAGATGAAAGATGTTTTCCCACCCTTTTTGGAACGTTCAATGTGGCACCATGAGGAGAAGCAACACAGCAGAGAAGGTTCAGAACCAGAGCCAAAGGCTGATGAAAATGATAGTTTCCATCTTTTTTTGTCTGATGCTCTGCCTGATCAACCTATAACTGGAGAAAATGACAATGTGTGGGCTTTAATTCCTGAACTTAGGTGGAAGTTGCACATCCACCAAAGAAAAGCTTTTGAATTTCTTTGGAAAAATATTGCTGGGTCTATGGACCCGACACTTATGGAAGCGGCATCCAAAAAAAGAGGTGGTTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACATTCCTTATTATTGCATTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGCGACCTTTGGTTCTTGCTCCTAAGACAACACTTTACACATGGTACAAAGAATTTATCAAATGGAAAATTCCTATTCCAGTATATCTAATTCATGGTCGTAGAACCTACCGAGCATTCAAGCAGAATGCAGTGGTTTTTCATGGTGGTCCAAAGCCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAGATACAAAAGTGGCACGCACATCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGGAAGTACATGGCTAAAGTATTGAGGGAAAGTCCTGGTATTCTTATATTGGATGAAGGGCACAATCCTAGAAGCACAAAGTCAAGGTTGAGGAAAGGTTTGATGAAAGTACAAACAGAATTGAGAATATTACTTTCGGGCACATTGTTTCAGAACAATTTCTGCGAATACTTCAACACTCTTTGCTTGGCAAGACCAAAGTTTGCTTTTGAAGTGTTGAAAAAACTGGACCCTAAATACAGGAGGAAGACGAAAGGAACAGGAAAAGCACGTCATTTGATAGAGGCGCGAGCTAGAAAATTCTTCTTGGATAATATTGCTAAAAAAGTTGACTCAAATGATGGAAAAGAGCAAAAGCAGGGTCTGAACATGTTGAGAAAGATGACCAGTGGTTTTATAGATGTTTATGAAAATGGGAACTCAGAGGATCTTCCTGGTTTACAAATCTATACATTGTTAATGAATACTACTGATATACAGCATGAGATTTTGAATAAACTCCAGAAGAAAATGTCTGGGTGCAATGGATATCCTTTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTAGTCAAAACAGCCGCATGTGCTGAGAAGTTTTTCTCTATAGAGCAATTGATGGAGCTAGAGAAATGGAAATATGATTTAAAAAAAGGGTCAAAAGTGAAATTTGTTTTGAGCCTGGTCTACCGTGTTGTCAGGAGTGAGAAGGTTCTTATGTTTTGCCATAACATTGCACCTGTGAGGTTATTTACAGAATTATTTGAGAAGTTCTTTGGATGGCATAGAGGTCAAGAAGTCTTGGTTCTTACTGGGGAGCTAGAGCTCTTTGAACGAGGAAGGATAATGGATAAGTTTGAGGATCCTAATGGAGCATCAAAGATACTTCTTGCTTCAATTTCATCTTGTGCTGAAGGCATTAGTTTGACAGCAGCCTCTCGGGTGATTTTATTGGATTCAGAATGGAATCCATCCAAGACAAAACAGGCTGTTGCACGTGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTACCAGCTGCTGGCAACAGGCACATTGGAGGAAGATAAGTATGGAAGAACAACTTGGAAAGAGTGGGTTTCCAACATGATTTTTAGTGAAGAATTTGTGCAAGACCCTTCCCGTTGGCAAGCAGAAAAGATTGAAGATGATATATTGCGAGAAATGGTTGCAGAAGACCGCTCCAATTCATTCCATAAGATTATGAAGAATGAAAATGCATCCACAAACTGA 3600 0.3853 MVWVDAKISSIQRKPHEPGCLCQYYVNVYVNQGCVGSEVRTLSKEIKVVGINQISILQRLEHSPCEDQHYRWDSSEDWHAVPQTKLLSGKFLSDISWLIVSSVLKQVSFCVRSAGNKIVYQIMGVDDNSFLLDVVNFRIDNSMLVPIVSQVISSDTDKVDNTDDSHKDKAFSSYNPEGLRRSKRRNVQPERYLGCDETHVLDVGFVRTRPYKMDIRKDDGEDDELSMPLSSLIGLQKNYGVMDDGSGLKFNKMTSYNKLKVYKRRPKSKEVNSGDVNINEIQSQLAIVPVPQECDPINIEHFDSNAKVSKYYTQRNVECPTKHYHVMGSPEPKRNNMDLLTFESYNHPSKIPGLEDCVEEIDDIASRCHYNLGTPKIKRKNSFGLNDTDFESRWEGINSDKAVQGKKYHSTISRGKQSDEERTYKARSLSAGAYKELIDSYLKNMNAKPSEAEPPITEQWIQFKETSNLGQKGETKSPQIEDEKETDELDILWREMEVSLASSYVEEDTEGSSAAVFTETWEKTDSLCRHDYRMNEEIGIYCLLCGIVSAEMKDVFPPFLERSMWHHEEKQHSREGSEPEPKADENDSFHLFLSDALPDQPITGENDNVWALIPELRWKLHIHQRKAFEFLWKNIAGSMDPTLMEAASKKRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRAFKQNAVVFHGGPKPTDDVKHILDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKGLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAFEVLKKLDPKYRRKTKGTGKARHLIEARARKFFLDNIAKKVDSNDGKEQKQGLNMLRKMTSGFIDVYENGNSEDLPGLQIYTLLMNTTDIQHEILNKLQKKMSGCNGYPLELELLITLGSIHPWLVKTAACAEKFFSIEQLMELEKWKYDLKKGSKVKFVLSLVYRVVRSEKVLMFCHNIAPVRLFTELFEKFFGWHRGQEVLVLTGELELFERGRIMDKFEDPNGASKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEDKYGRTTWKEWVSNMIFSEEFVQDPSRWQAEKIEDDILREMVAEDRSNSFHKIMKNENASTN 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1452 1199 MobiDBLite consensus disorder prediction 156 186 - -
Prci13g1452 1199 SMART ultradead3 616 859 IPR014001 -
Prci13g1452 1199 Gene3D - 922 1199 IPR027417 -
Prci13g1452 1199 CDD SF2_C_SNF 994 1130 - -
Prci13g1452 1199 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1006 1171 IPR001650 -
Prci13g1452 1199 Gene3D - 600 885 IPR038718 -
Prci13g1452 1199 SMART helicmild6 1030 1119 IPR001650 -
Prci13g1452 1199 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 645 844 IPR014001 -
Prci13g1452 1199 Pfam Helicase conserved C-terminal domain 1002 1118 IPR001650 -
Prci13g1452 1199 MobiDBLite consensus disorder prediction 567 586 - -
Prci13g1452 1199 Pfam SNF2-related domain 620 915 IPR000330 GO:0005524|GO:0140658
Prci13g1452 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 846 IPR027417 -
Prci13g1452 1199 MobiDBLite consensus disorder prediction 157 186 - -
Prci13g1452 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 920 1177 IPR027417 -
Prci13g1452 1199 CDD DEXHc_ATRX-like 620 845 - -
Prci13g1452 1199 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 1197 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1452 Prci-Chr13 15979768 15994320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1452 998 1137 RAD5 or RAD16-like Gene Family AT5G43530 32.867 3.02e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci13g1452 SNF2_N 8.9e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1452 K10875 - gmx:100811703 1601.65