Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1450 ATGCACAGAAAGAGGCGTTTACATCAATTGAAGCATCCATTTGATTCTCACCCATTTGAGGCAATTCTCCATGGGTCATGGCAAGCTTTGAGGTACATAACGATTGAGGGAGGAACAATGGTCTTTCATTTTAAAGGTAACAACCATGTGGTTAGAGAGAAAGCTCCCATTTCAGACCTTCGGATAAGATCTAGGAAAGCAACTGTATCAGATTGCTCCAGCTTTTTAAGACCAGGAATTGACATATGTGTACTTTCTTCCTTTCAACAAACTAATGGCTCAGATCAAAATAATCTTAATCCTGTGTGGGTTGATGCTAAAATAAGTTCTATACAGAGAAAGCCACATGAACCTGGGTGCTTGTGTCAATATTATGTGAACGTTTATGTTAATCAAGGTTGTGTTGGTTCTGAGGTAAGAACTCTGAGTAAGGAGATCAAAGTAGTTGGAATAAATCAAATATCTATTCTCCAAAGGCTTGAGCATAGTCCTTGTGAAGATCAGCACTATCGATGGGATTCATCTGAGGATTGGCATGCAGTGCCACAAACTAAATTGCTTTCAGGGAAATTTCTATCTGATATTTCATGGTTAATTGTCTCATCTGTTTTAAAGCAGGTTTCATTTTGTGTGAGATCTGCAGGTAACAAGATTGTGTATCAAATCATGGGGGTGGATGATAATAGCTTCCTGTTGGATGTTGTAAATTTCAGAATAGACAACAGCATGTTAGTACCCATTGTTTCCCAGGTTATTTCATCTGACACTGATAAGGTTGACAATACAGATGACTCCCATAAAGATAAAGCATTTTCATCTTATAATCCTGAGGGTTTGCGTCGTTCCAAACGTCGAAATGTACAACCTGAGCGCTACCTTGGCTGTGATGAGACTCATGTGTTGGATGTTGGTTTTGTTCGAACCAGGCCATACAAGATGGACATTCGAAAAGATGATGGAGAGGATGATGAATTGTCAATGCCATTATCATCCCTGATTGGTTTGCAAAAAAATTATGGAGTGATGGATGATGGCAGTGGACTGAAGTTTAATAAGATGACGTCTTACAACAAACTTAAAGTGTATAAAAGGAGGCCTAAGTCTAAGGAGGTGAATTCAGGTGATGTCAATATAAATGAAATTCAATCTCAACTTGCCATTGTTCCTGTTCCTCAAGAATGTGATCCTATTAACATTGAGCATTTTGATTCCAATGCCAAGGTCTCTAAATATTACACACAAAGAAATGTTGAATGTCCTACCAAACATTATCATGTGATGGGCAGTCCTGAACCAAAGAGGAATAATATGGATTTGTTAACTTTTGAATCCTATAATCATCCTTCAAAGATTCCAGGTCTTGAAGATTGTGTTGAAGAGATTGATGATATTGCTTCCCGATGTCATTATAATCTTGGCACCCCTAAAATAAAGAGGAAGAATTCATTTGGTTTGAATGATACGGATTTTGAAAGCAGATGGGAAGGGATAAATTCTGATAAAGCAGTTCAAGGGAAAAAATATCATTCAACAATTTCAAGAGGCAAACAATCTGATGAAGAAAGAACTTATAAAGCTAGGTCCTTAAGTGCAGGTGCCTACAAGGAATTGATAGACTCATATTTAAAGAATATGAATGCAAAACCATCTGAAGCAGAGCCACCTATTACTGAGCAGTGGATACAATTCAAGGAAACAAGTAACTTAGGACAAAAGGGGGAAACAAAGTCACCCCAAATTGAGGATGAGAAAGAAACCGATGAACTAGATATATTGTGGAGAGAAATGGAAGTTTCACTGGCATCAAGTTATGTTGAAGAAGACACAGAGGGTTCAAGTGCTGCAGTTTTTACTGAGACCTGGGAAAAAACTGATTCACTTTGTCGCCATGATTATAGAATGAATGAAGAAATTGGAATTTACTGTCTATTATGTGGCATTGTCAGTGCTGAGATGAAAGATGTTTTCCCACCCTTTTTGGAACGTTCAATGTGGCACCATGAGGAGAAGCAACACAGCAGAGAAGGTTCAGAACCAGAGCCAAAGGCTGATGAAAATGATAGTTTCCATCTTTTTTTGTCTGATGCTCTGCCTGATCAACCTATAACTGGAGAAAATGACAATGTGTGGGCTTTAATTCCTGAACTTAGGTGGAAGTTGCACATCCACCAAAGAAAAGCTTTTGAATTTCTTTGGAAAAATATTGCTGGGTCTATGGACCCGACACTTATGGAAGCGGCATCCAAAAAAAGAGGTGGTTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACATTCCTTATTATTGCATTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGCGACCTTTGGTTCTTGCTCCTAAGACAACACTTTACACATGGTACAAAGAATTTATCAAATGGAAAATTCCTATTCCAGTATATCTAATTCATGGTCGTAGAACCTACCGAGCATTCAAGCAGAATGCAGTGGTTTTTCATGGTGGTCCAAAGCCTACTGATGATGTCAAGCATATTTTGGATTGCCTGGAAAAGATACAAAAGTGGCACGCACATCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGGAAGTACATGGCTAAAGTATTGAGGGAAAGTCCTGGTATTCTTATATTGGATGAAGGGCACAATCCTAGAAGCACAAAGTCAAGGTTGAGGAAAGGTTTGATGAAAGTACAAACAGAATTGAGAATATTACTTTCGGGCACATTGTTTCAGAACAATTTCTGCGAATACTTCAACACTCTTTGCTTGGCAAGACCAAAGTTTGCTTTTGAAGTGTTGAAAAAACTGGACCCTAAATACAGGAGGAAGACGAAAGGAACAGGAAAAGCACGTCATTTGATAGAGGCGCGAGCTAGAAAATTCTTCTTGGATAATATTGCTAAAAAAGTTGACTCAAATGATGGAAAAGAGCAAAAGCAGGGTCTGAACATGTTGAGAAAGATGACCAGTGGTTTTATAGATGTTTATGAAAATGGGAACTCAGAGGATCTTCCTGGTTTACAAATCTATACATTGTTAATGAATACTACTGATATACAGCATGAGATTTTGAATAAACTCCAGAAGAAAATGTCTGGGTGCAATGGATATCCTTTGGAGTTAGAGCTTTTGATAACCCTTGGATCAATACATCCTTGGTTAGTCAAAACAGCCGCATGTGCTGAGAAGTTTTTCTCTATAGAGCAATTGATGGAGCTAGAGAAATGGAAATATGATTTAAAAAAAGGGTCAAAAGTGAAATTTGTTTTGAGCCTGGTCTACCGTGTTGTCAGGAGTGAGAAGGTTCTTATGTTTTGCCATAACATTGCACCTGTGAGGTTATTTACAGAATTATTTGAGAAGTTCTTTGGATGGCATAGAGGTCAAGAAGTCTTGGTTCTTACTGGGGAGCTAGAGCTCTTTGAACGAGGAAGGATAATGGATAAGTTTGAGGATCCTAATGGAGCATCAAAGATACTTCTTGCTTCAATTTCATCTTGTGCTGAAGGCATTAGTTTGACAGCAGCCTCTCGGGTGATTTTATTGGATTCAGAATGGAATCCATCCAAGACAAAACAGGCTGTTGCACGTGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTACCAGCTGCTGGCAACAGGCACATTGGAGGAAGATAAGTATGGAAGAACAACTTGGAAAGAGTGGGTTTCCAACATGATTTTTAGTGAAGAATTTGTGCAAGACCCTTCCCGTTGGCAAGCAGAAAAGATTGAAGATGATATATTGCGAGAAATGGTTGCAGAAGACCGCTCCAATTCATTCCATAAGATTATGAAGAATGAAAATGCATCCACAAACTGA 3900 0.3859 MHRKRRLHQLKHPFDSHPFEAILHGSWQALRYITIEGGTMVFHFKGNNHVVREKAPISDLRIRSRKATVSDCSSFLRPGIDICVLSSFQQTNGSDQNNLNPVWVDAKISSIQRKPHEPGCLCQYYVNVYVNQGCVGSEVRTLSKEIKVVGINQISILQRLEHSPCEDQHYRWDSSEDWHAVPQTKLLSGKFLSDISWLIVSSVLKQVSFCVRSAGNKIVYQIMGVDDNSFLLDVVNFRIDNSMLVPIVSQVISSDTDKVDNTDDSHKDKAFSSYNPEGLRRSKRRNVQPERYLGCDETHVLDVGFVRTRPYKMDIRKDDGEDDELSMPLSSLIGLQKNYGVMDDGSGLKFNKMTSYNKLKVYKRRPKSKEVNSGDVNINEIQSQLAIVPVPQECDPINIEHFDSNAKVSKYYTQRNVECPTKHYHVMGSPEPKRNNMDLLTFESYNHPSKIPGLEDCVEEIDDIASRCHYNLGTPKIKRKNSFGLNDTDFESRWEGINSDKAVQGKKYHSTISRGKQSDEERTYKARSLSAGAYKELIDSYLKNMNAKPSEAEPPITEQWIQFKETSNLGQKGETKSPQIEDEKETDELDILWREMEVSLASSYVEEDTEGSSAAVFTETWEKTDSLCRHDYRMNEEIGIYCLLCGIVSAEMKDVFPPFLERSMWHHEEKQHSREGSEPEPKADENDSFHLFLSDALPDQPITGENDNVWALIPELRWKLHIHQRKAFEFLWKNIAGSMDPTLMEAASKKRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRAFKQNAVVFHGGPKPTDDVKHILDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKGLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAFEVLKKLDPKYRRKTKGTGKARHLIEARARKFFLDNIAKKVDSNDGKEQKQGLNMLRKMTSGFIDVYENGNSEDLPGLQIYTLLMNTTDIQHEILNKLQKKMSGCNGYPLELELLITLGSIHPWLVKTAACAEKFFSIEQLMELEKWKYDLKKGSKVKFVLSLVYRVVRSEKVLMFCHNIAPVRLFTELFEKFFGWHRGQEVLVLTGELELFERGRIMDKFEDPNGASKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAVARAFRPGQQKMVYVYQLLATGTLEEDKYGRTTWKEWVSNMIFSEEFVQDPSRWQAEKIEDDILREMVAEDRSNSFHKIMKNENASTN 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1450 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1020 1277 IPR027417 -
Prci13g1450 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 946 IPR027417 -
Prci13g1450 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 745 944 IPR014001 -
Prci13g1450 1299 SMART helicmild6 1130 1219 IPR001650 -
Prci13g1450 1299 Pfam SNF2-related domain 720 1015 IPR000330 GO:0005524|GO:0140658
Prci13g1450 1299 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 51 1297 IPR044567 GO:0080188
Prci13g1450 1299 MobiDBLite consensus disorder prediction 256 286 - -
Prci13g1450 1299 Gene3D - 700 985 IPR038718 -
Prci13g1450 1299 Pfam Helicase conserved C-terminal domain 1102 1218 IPR001650 -
Prci13g1450 1299 MobiDBLite consensus disorder prediction 667 686 - -
Prci13g1450 1299 MobiDBLite consensus disorder prediction 257 286 - -
Prci13g1450 1299 CDD SF2_C_SNF 1094 1230 - -
Prci13g1450 1299 CDD DEXHc_ATRX-like 720 945 - -
Prci13g1450 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1106 1271 IPR001650 -
Prci13g1450 1299 SMART ultradead3 716 959 IPR014001 -
Prci13g1450 1299 Gene3D - 1022 1299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1450 Prci-Chr13 15979768 15996488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1450 1098 1237 RAD5 or RAD16-like Gene Family AT5G43530 32.867 3.58e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci13g1450 SNF2_N 1e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1450 K10875 - gmx:100811703 1743.01