Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1420 ATGAGTCAGTGTGTTCCTAGCTGGGATTTGGATGAAAATCCCACAGCCCCAAGAGTCCCTCTTCGTAGTTCAAATTCCAATTCCACTGCTCCTGATGTTCCCGTGTTAGACTACGAAGTTGCGGAGCTGACATGGGAAAATGGACAGCTCTTCATGCACGGTTTCGGTCAGCCAAGAGTACCGGAGAAACCCATCTCCGCCGGCGCCGGCGCCAGGTCAATAGCCCCATCTTCCAAGTACACATGGGACAAGCCACGCGCGAGTGGCACCTTGGAGTCTATAGTAAACCAAGCCACTCGCTTTCCCCACCGGAGCAAATCCGTTTTCGACGTCGGCGCCACCGACGGCGATGACTTAGTGCCGTGGCTTGATAACCAGAGAGCGGCGGCGGCGGCTGCCGTAATGACCACCATCGCTACGGCGGCGGCATCGAACACGGTCACCATGGACGCCATGGTGCCTTGTTCAAATCGCACCGAAGAGAAGCGGACCACACGTGGTGCCACAGTTAGCACGTGCGTGGTGGGCTGTTCTACACGTGTGGGGTCTTGTAGTGAGCCCGCCACGCAAGGGGAAGAGACACTATTGGCGTCGCAACGCTCGAAGGTGGCGCGTGTGCCAGTGGCTCCTGAGTGGAGTAGCAGAGATCCGAGTGCGAGTGGAAGCGCCACGTTTGGAAGAGAAAGCCAGCACGTGACGTTGGACACGTGCGAGAAGGAATTGGAGATGGGTTTCGTTTCCATGTCGATGGGGTCGCCGGAAAACACCAGCTCCGCCAAGCAGTGCACCAAAACCACCAACGCCGACGACCACGATTCTGTTTGTCATAGCGGACCACAGAAAGAGACAGGCGATGAGGAGGACGAAAAGAAAGGAATAGGAAGAACCTCAGTGTCCACTAAAAGGAGAAGGGCAGCAGCAGTACACAACCAATCTGAAAGGAAAAGGAGAGATAAGATAAACCAGAGGATGAGGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACAGATAAAGCTTCAATGCTGGATGAGGTGATAGAGTATCTAAAGCAGCTGCAAGCTCAGGTGCATGTGATGAGTAAAATGAATATGTCAGCCATGTTGCTACCAATGGCCATGCAACAACTTCAAATGTCCATGATGCCTCCTATGGGCATGGGCATGGGCTTGAGAATGGGAATGGGTATTGATATGAATAACATCAGTCGTGGAAACAGCTTTGTTGGTATTCCTCCGGTCTTCCATCCTTCGGCTTTCATGCCTTTGGCTTCATGGGATGCCACGTCACTTGGCACTGATCGACTACAAGGAGCTCCGTCAACGACCGTGATGCCTGATCCATTGTCCACTTTTTTAGCAGGGCAAAACCAGCCTATGACCATGGATGCATACAATAGGATGGTTGCCATGTATCAGCAGCTATACCAACCTCCAGGTTCTACTTCCAAGAGCTGA 1458 0.5281 MSQCVPSWDLDENPTAPRVPLRSSNSNSTAPDVPVLDYEVAELTWENGQLFMHGFGQPRVPEKPISAGAGARSIAPSSKYTWDKPRASGTLESIVNQATRFPHRSKSVFDVGATDGDDLVPWLDNQRAAAAAAVMTTIATAAASNTVTMDAMVPCSNRTEEKRTTRGATVSTCVVGCSTRVGSCSEPATQGEETLLASQRSKVARVPVAPEWSSRDPSASGSATFGRESQHVTLDTCEKELEMGFVSMSMGSPENTSSAKQCTKTTNADDHDSVCHSGPQKETGDEEDEKKGIGRTSVSTKRRRAAAVHNQSERKRRDKINQRMRTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVHVMSKMNMSAMLLPMAMQQLQMSMMPPMGMGMGLRMGMGIDMNNISRGNSFVGIPPVFHPSAFMPLASWDATSLGTDRLQGAPSTTVMPDPLSTFLAGQNQPMTMDAYNRMVAMYQQLYQPPGSTSKS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1420 485 Coils Coil 310 330 - -
Prci13g1420 485 FunFam transcription factor UNE10 isoform X1 299 364 - -
Prci13g1420 485 Gene3D - 299 365 IPR036638 GO:0046983
Prci13g1420 485 MobiDBLite consensus disorder prediction 1 32 - -
Prci13g1420 485 MobiDBLite consensus disorder prediction 265 296 - -
Prci13g1420 485 MobiDBLite consensus disorder prediction 18 32 - -
Prci13g1420 485 MobiDBLite consensus disorder prediction 249 317 - -
Prci13g1420 485 MobiDBLite consensus disorder prediction 207 232 - -
Prci13g1420 485 Pfam Helix-loop-helix DNA-binding domain 308 354 IPR011598 GO:0046983
Prci13g1420 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Prci13g1420 485 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 40 483 IPR031066 -
Prci13g1420 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 373 IPR036638 GO:0046983
Prci13g1420 485 MobiDBLite consensus disorder prediction 249 264 - -
Prci13g1420 485 SMART finulus 310 359 IPR011598 GO:0046983
Prci13g1420 485 CDD bHLH_AtPIF_like 304 365 IPR047265 -
Prci13g1420 485 MobiDBLite consensus disorder prediction 215 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1420 Prci-Chr13 14717987 14727228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1420 1 469 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 46.458 3.65e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci13g1420 HLH 7.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1420 - - jcu:105643171 549.666