Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1408 ATGTTGGATTATGAATGGGGCAATCCTTCGACAATAATGCTCACCGGAAACGAAGAAGATGCAGCTGTAGCGGCGGCGGCCGACTCCGAACAAACGCGACGGCAAATCTTCGACCACTATAATTCTCACCCTTTCTTGCCAGACCACCTTATTTCTCATTCTCCACCGGGACCCACACCGACCACCACCTCGGATTTCTCTCTTGTACAACACCAACAACAATTTCACGCGCAATCTCATCACCACATCATCCACCACCACCACCACCCACATTCTCTCTTTGACACACGCGCCTTCCCCGTCGCGTCGCCGTCGCATTTTCCTCCACCGCAGACACAACCTCCACCACTTGCACAGTCACCTCATTCCATGTTCTCCCTTGACCCGCTTCCTCCGGTCAACGCCGGTAACTGCGGACCTGGTGGTGGGCTTCTGGCTGTGCCCAAGTCCGAGGATGTGGGTCGGCCCATGGACTTTCCGGCGTCTCGAATTGGACTCGACCTGGGCGGCCGAACGTACTTCTCCAGCTCCGAAGACGACTTCGTGAGCCGCCTTTACCGCCGGTCCAGGCCGTCGGAGCCAGGCTCGACTATGTCGTTGAACAACAACTCACCGAGATGCCAAGCCGAGGGATGTAATGCCGATCTTTCCCATGCGAAGCACTACCACCGCCGACACAAGGTCTGCGAGTTTCACTCCAAGGCTGCCACAGTCATCACCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGTAGCAGGTTTCATCTGCTTTCGGAGTTCGATAACGGAAAACGAAGCTGCAGGAAAAGATTGGCAGATCATAATCGCCGCAGAAGAAAAACTCAACAACTACCTCAAGAAACCCAGAAATCTCACCCCGAAAAGGCTCGCAATTCTGTAGCAAAAGGGTCGCCACCAGATTCTGGAATCCAGTCATCGTCGTCGGTGACGGTGGCAGCGTCCCCGCCGGATTATTTCCAGCAAAAGCCATATCAAAACACAACAAGCTCTTCCACAACATCAAGGACACTGTTTTTCTCGAGTGGATAA 1050 0.541 MLDYEWGNPSTIMLTGNEEDAAVAAAADSEQTRRQIFDHYNSHPFLPDHLISHSPPGPTPTTTSDFSLVQHQQQFHAQSHHHIIHHHHHPHSLFDTRAFPVASPSHFPPPQTQPPPLAQSPHSMFSLDPLPPVNAGNCGPGGGLLAVPKSEDVGRPMDFPASRIGLDLGGRTYFSSSEDDFVSRLYRRSRPSEPGSTMSLNNNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVITAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQLPQETQKSHPEKARNSVAKGSPPDSGIQSSSSVTVAASPPDYFQQKPYQNTTSSSTTSRTLFFSSG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1408 349 SUPERFAMILY SBT domain 205 282 IPR036893 GO:0003677|GO:0005634
Prci13g1408 349 MobiDBLite consensus disorder prediction 270 349 - -
Prci13g1408 349 MobiDBLite consensus disorder prediction 304 349 - -
Prci13g1408 349 MobiDBLite consensus disorder prediction 278 297 - -
Prci13g1408 349 ProSiteProfiles Zinc finger SBP-type profile. 204 281 IPR004333 GO:0003677
Prci13g1408 349 FunFam Squamosa promoter-binding-like protein 14 198 268 - -
Prci13g1408 349 Gene3D - 199 268 IPR036893 GO:0003677|GO:0005634
Prci13g1408 349 Pfam SBP domain 207 280 IPR004333 GO:0003677
Prci13g1408 349 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 187 335 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1408 Prci-Chr13 14354946 14357375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1408 1 254 SBP-box Gene Family AT1G02065 50.000 6.41e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci13g1408 SBP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1408 - - gmx:100778566 414.846