Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1406 ATGGACTTTGAAGGGAACATGTTCTGCTTGAGCAACGCTAACAGAGAGCAAAACGGTGGTGGAAATAGTAATAACAGTACCAACTTTTCTTGGGATTTATGGGAACCGCCTTCTTCTAACAATTCTACCCTCATCAACACTTTCTACGCCGCCGATACGGCTCAGACCTCGGCGGCTGCCGCCCCCACTCGCCATGAGGAGGCCAGCCTAGCAAACGCACTGATGTTTCTTCCTCAGGCTAGTAGTAGTAGCACCGCGGCTGATCGTGACCACGATGGCGGCGGTGTTAACCACGGTGGTCATCAGCGGCGGCAGCAACAGGAGGCGGCGCTGTATTCCGGCGATGGGTCGCGCTTGCATCTGGACCCACATCTCATGTGCTTGAAGCTAGGGAAGAGGCATTATTTTGAGGACGCTAATGCTCCTCTTGGCGGCGGCGGAGGAGGAGGCAGCGGCGGCGAGGGCTTTAATTTGGCGGGAAAGAGAGGGAGGGGGTTCTATGGAGGAGGCGGTGTGAAGATGGGGACGGCGGCGACGGTGCCGAGGTGTCAGGTGGAGGGATGCCACGTGGCGCTGTTGAATGCGAAGGAATACCACCGGAGGCACAAAGTTTGTGAGATGCATTCCAAGGCACCCAAGGTTGTCGTGTTAGGGTTGGAGCAGAGATTTTGTCAACAGTGTAGCAGGTTTCATGTGATAACGGAGTTCGATGATTCCAAAAGGAGTTGCCGTAGGAGATTGGCTGGCCACAATGAACGAAGAAGAAAGAGCTTCCACGATTCTGTTTCTAGGAATCCCTCCTCTCAAGGGTGTGCTCTCTCTCTTCTGTCATCGTCTAAGAGTGACCATTCATGGCTTTCTCCGGCTGATCTCTCGGCGAGATGCAGCGCCGCGCTCCGAGAACTCATAGCCGAGAACCGAGCAGCCGTCATGGCTAAACAAATCATTTTGGAAAGAGACTGGCTTCCACACCACCACCACCACCAAGAAGGTGATGATGATGATGATGACCATAATAAGGATGATATCCAACTTCAATCCAATTTTAATTTCTCTCAACATCAACATATGTTTCCCTAA 1080 0.5259 MDFEGNMFCLSNANREQNGGGNSNNSTNFSWDLWEPPSSNNSTLINTFYAADTAQTSAAAAPTRHEEASLANALMFLPQASSSSTAADRDHDGGGVNHGGHQRRQQQEAALYSGDGSRLHLDPHLMCLKLGKRHYFEDANAPLGGGGGGGSGGEGFNLAGKRGRGFYGGGGVKMGTAATVPRCQVEGCHVALLNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVITEFDDSKRSCRRRLAGHNERRRKSFHDSVSRNPSSQGCALSLLSSSKSDHSWLSPADLSARCSAALRELIAENRAAVMAKQIILERDWLPHHHHHQEGDDDDDDHNKDDIQLQSNFNFSQHQHMFP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1406 359 Pfam SBP domain 183 256 IPR004333 GO:0003677
Prci13g1406 359 MobiDBLite consensus disorder prediction 81 113 - -
Prci13g1406 359 FunFam Squamosa promoter-binding-like protein 14 174 244 - -
Prci13g1406 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 160 292 IPR044817 GO:0003677
Prci13g1406 359 Gene3D - 174 244 IPR036893 GO:0003677|GO:0005634
Prci13g1406 359 SUPERFAMILY SBT domain 181 261 IPR036893 GO:0003677|GO:0005634
Prci13g1406 359 ProSiteProfiles Zinc finger SBP-type profile. 180 257 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1406 Prci-Chr13 14191163 14194739 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1406 126 256 SBP-box Gene Family AT1G27360 52.273 3.44e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Prci13g1406 SBP 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1406 - - pcin:129291456 635.18