Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1396 ATGGAAAGTGATGCCCAGGACATCTTTGGCTCGTTCTCTTCATCTTCATTATCTTCTTCACCATCATCTTCATCATCGTCTTCAAACTCATCAGATTCTGCAGGTACCAAGGGAGACTCATCAAAAAGTGTATCAGATCATCATCTGAATGTTGATGATTATTCCTGCAACAAGAAGCTGCAGATCAGAAGTAGTGACGAAAAGAATAACAATAACAATCATAATAAGCATCCAGCTTACAGAGGTGTGAGGATGAGAAACTGGGGAAAATGGGTTTCTGAGATTCGTGAGCCCAGGAAGAAATCCAGAATATGGCTTGGAACTTACCCAACTGCAGAAATGGCGGCTCGAGCTCACGACGTCGCCGCTTTAGCCATCAAAGGTCATTCGGCTTACCTCAATTTCCCTCACTTGGCTCCGGAGCTTCCCCGGCCGGCCACCACTGCTCCTAAGGACATCCAAGCTGCAGCCGCAAAGGCTGCCACCAGTGTCTTTGAGGTGGTGGTGGCTGCTAAAACGCATTGTCAAGCCGACAAACCAGAGTCAGCTGAACCGGTCCGAGCCGAGCCGGCCTCATCTTCAATTACTCGAGACCGGTCTAAGGAAGACGAGGCTTTGTTTGACTTACCAGATCTTTTCACTGATGGCAACAATGGCCTTTGTTCTTATTCTTCTGCTTCTTCTTCTTCCTCTTCTTCTTGGAATTTTTGTGCAGTTGATAGTGGTTTCAGGCTTGAGGAGCCATTTCTTTGGGAAAACTATTAG 765 0.468 MESDAQDIFGSFSSSSLSSSPSSSSSSSNSSDSAGTKGDSSKSVSDHHLNVDDYSCNKKLQIRSSDEKNNNNNHNKHPAYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPHLAPELPRPATTAPKDIQAAAAKAATSVFEVVVAAKTHCQADKPESAEPVRAEPASSSITRDRSKEDEALFDLPDLFTDGNNGLCSYSSASSSSSSSWNFCAVDSGFRLEEPFLWENY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1396 254 MobiDBLite consensus disorder prediction 41 57 - -
Prci13g1396 254 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Prci13g1396 254 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Prci13g1396 254 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Prci13g1396 254 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Prci13g1396 254 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Prci13g1396 254 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 216 - -
Prci13g1396 254 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Prci13g1396 254 CDD AP2 80 138 IPR001471 GO:0003700|GO:0006355
Prci13g1396 254 MobiDBLite consensus disorder prediction 1 57 - -
Prci13g1396 254 Pfam AP2 domain 78 129 IPR001471 GO:0003700|GO:0006355
Prci13g1396 254 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Prci13g1396 254 MobiDBLite consensus disorder prediction 176 200 - -
Prci13g1396 254 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1396 Prci-Chr13 13956271 13957143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1396 67 250 AP2-EREBP Transcription Factor Family AT2G44940 53.991 4.41e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci13g1396 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1396 - - gsj:114420351 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g1396 13 13956271 13957143 Prci13g1396 13 13956271 13957143 ECH