Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1375 ATGCAAGTAAAGAAGAAGGACCAAGGGCCTATAAGGAAAGGGCCATGGAAAGCCGAGGAAGACGAGGTGCTTCTAAGTCATGTCAATAAGTATGGCCCCAGAGACTGGAGCTCCATTCGATCCAAGGGGCTTCTTCAACGCACTGGCAAGTCTTGTCGACTTCGCTGGGTCAATAAGCTTCGCCCAAACCTCAAGAATGGGTGCAAATTTTCTCCGGAGGAAGAGAGGGTGGTGATAGAATTGCAGGCACAGTTTGGGAACAAATGGGCCAAGATTGCGTCTTATTTGCCAGGAAGAACAGATAATGATGTCAAAAATTTCTGGAGTAGTAGGCAAAAGAGGCTTGCTAGGATTCTCCATTCGTCTTCACCATCCTCAAAATCCCACAAGAACAAGAATAAAGTCGCCACTTTACACATTAATATTCCGCCTTTGGAGGCTCCTAAATTTAGTTCATCTGAGGAAGAATCTTCATCAAAGGCTCATCAGCCATGCTCATCATCCTTTACTGAGAATTCAGAGGTTATAAAAATGGTGCCATTGCCAGATCTCATGAACTTCGCGAACCCCTTGAGTTTTGACGCAGTCACTTCGATCAAAGAAGAGTTTACGACACCGTTGGAGAGTTGCATGAGCACTGACATGATCTCACAAATTGGTTTCCCTCAGGGTTCCCCATTCTCAATGGAAAGTCAAGATCTCTTCTTGGCCAGAGCTAACGAATCTGCTGGTTTCGCTGATGGAATAGGAGTGGACCCTTTGGAAGATTATGCATCAGAACTTGGAATAGGAACACAGATTCCCTTTTATGGGTTTCCTTTCAATGATTCATCGGGAAGTTGCAGAATTGAGACAAGGAATCCAATCGGTAACCCCACAAACCTTGATAGCGTCTTTGGTGATTTTCCAGATGACATGTTTGATAACCTCCAGCCACCTCCAAGCCCATCATCACCAGAGCTATGA 966 0.4513 MQVKKKDQGPIRKGPWKAEEDEVLLSHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSPEEERVVIELQAQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARILHSSSPSSKSHKNKNKVATLHINIPPLEAPKFSSSEEESSSKAHQPCSSSFTENSEVIKMVPLPDLMNFANPLSFDAVTSIKEEFTTPLESCMSTDMISQIGFPQGSPFSMESQDLFLARANESAGFADGIGVDPLEDYASELGIGTQIPFYGFPFNDSSGSCRIETRNPIGNPTNLDSVFGDFPDDMFDNLQPPPSPSSPEL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1375 321 Gene3D - 13 65 - -
Prci13g1375 321 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Prci13g1375 321 MobiDBLite consensus disorder prediction 301 321 - -
Prci13g1375 321 MobiDBLite consensus disorder prediction 146 167 - -
Prci13g1375 321 Gene3D - 68 139 - -
Prci13g1375 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 56 IPR017930 -
Prci13g1375 321 Pfam Myb-like DNA-binding domain 16 75 - -
Prci13g1375 321 CDD SANT 15 60 IPR001005 -
Prci13g1375 321 CDD SANT 69 108 IPR001005 -
Prci13g1375 321 FunFam Transcription factor GAMYB 68 137 - -
Prci13g1375 321 ProSiteProfiles Myb-like domain profile. 69 112 IPR001005 -
Prci13g1375 321 SMART sant 12 62 IPR001005 -
Prci13g1375 321 SMART sant 66 114 IPR001005 -
Prci13g1375 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Prci13g1375 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 116 IPR017930 -
Prci13g1375 321 PANTHER TRANSCRIPTION FACTOR DUO1 4 318 - -
Prci13g1375 321 FunFam MYB transcription factor 13 65 - -
Prci13g1375 321 MobiDBLite consensus disorder prediction 151 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1375 Prci-Chr13 12900951 12902938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1375 1 316 MYB Transcription Factor Family AT3G60460 48.788 9.93e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci13g1375 Myb_DNA-bind_6 7.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1375 K09422 - gmx:100805384 330.487