LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci13g1329	ATGGCAGATGCAGCACTTGATCCATTCTTTCCACACTATGGTGGATCGTTTCAAGAAGCTGGTTGGCGTGAGAGGAATATGGAAGGAAACTCTTCACCAGCGACGTTAACGCTCACGATGTTCTGCAATAAATCTAAATTTGTGTCAACTTTTGCGCACACAGATTGGATAAGCATCGACTGTGGAGCAAGCATTGGATACACTGACCCAGAAACAGAAATCTCGTATCAGACGGACACAGGCTTCGTAGAAACGGGAGAAATTAATATGGTGGCAGCTGAAGAAAGATTTGACGTAGATTTTCCTTATTTTGGGAGACAACTAAAGACACTGAGGAGTTTCCCAAAAGGAAAAAGAAATTGCTACACCCTAAATCCAAAACAGGGCAAAAACAGCAATTACCTCGTTAGAGCTTTCTTCGCTTATGGAAATTATGATGGCAAAAATAAAACTCCAACTTTTGACTTGTACCTCGGCGTCAATTATTGGACAAATGTTAATCCGGGAGATGGCTATCAAAAAACAGAAATTATCCATACTCCCACAACTGACACCATACATGTTTGCCTTCTTAAGACTTCCGAAGACATACCTATCATTTCTACATTGGAAATACGACCTCTCCACAATGATATTTATCTAACTCCATCCCCTTCTCAATCACTATTAGTCCTTGATGAGAGAATTGATGTTGGCTCCATTCCGTCGACTTCAACCCTGTTCAGAAGATTTCGAGATGACATCTATGATCGTGTGTGGCGTGTGGACGATATTTTTGAAGATGAAGGTTGGCAACGGTTCAATAGATCTGTCGATATTGATCGCAGAAGCATAAATGATTCTTATAAATTACCGCTAAATGTGATGTTATCTGCAACCCAACCATTGAATCTCTCCGCTCCTTTATACCTTGACTATGACTCTTTCTGGACCGAGCCAACTGAAAGATCTTTCAGATATTTTGTCTACTTTCACTTTGTTGAAATTGAGCGGCTTCCCCATGGAAAGAAGAGAGTCATCGATGTTACTGTTAATGATGAATATATCCTCCGAGAGAGAACTCTTGAATACTTGAAGCCGGTGGCGGTTACTGATGTTACGAAACAAGACGGTCTTAGTTTTAGCATAAGTGCAACAGCAGAATCTGATCCTCCTCCAATTCTTAATGCCCTTGAGGTTTATAAGTTAATATCAGAGCTAGCATCCCCAACTAACCAAAAAGATGTGGATGCCATTTTGGACATTAAAAACACATACAAAATAGTAGATTGTCAAGGTGACCCATGTGTTCCGGTGAACCATGCTTGGGAGAGACTTAAGTGCAGTTATGGCATTGATTACTCCAACGCAAGGATCACCTCACTAAACATGAGCTCGTGCAAGTTAACAGGACAAATAGTTGCTTCATTTTCACAACTCATGGAGTTGGAGTCCTTGGATTTATCAAGTAATGACTTGTCAGGACCAGTACCTGAATTTCTAGCTGAATTACCAAAGTTGAGAATCCTTAATTTGAGTGGCAACAGGCTCGAGGGTTCAATTCCCAAGGCTCTTAAAGAAAAGTCTGATTTGGAAATGAGTTTGGACGGTAATCCCAGCCTATGTTTGAAGCAACCATGCAGAAAGCAAAAGTTCCTTATTCCACTTATAGCATCTGTTTCGATTTTGACGGTTCTAATTATCTTGATTTCTCTTGGAATTTGGGTGTTCAAAATGAAAAAACTGAAAGTGGATTCTACCGTCTCAACAAAGCAAGCATCAGAACCAAGAAATCGTGCTTTTTCTTATTCCGACGTCCTTGAGATGACAAATAACTTACAAAACTTGATTGGAGAAGGTGGATTTGGAAAAGTTTATTTAGGAACCCTTAAGAATAGCACTCAAGTTGCAGTGAAGTTACTTTCTCATTTATCAGTGCAAGGTCATAGAGAATTTCGATCAGAGGTAGAACTTTTGATGGTGATTCATCACAGACACTTAGTTTCTCTGATTGGATATTGCGAACAAAGAGGCGTCAGGGCATTAATATATGAATATATGGTTAATGGGAACCTCCACCATCATTTATCAAGTAATAAAGGAGGTGGTTTGAAATGGAAAGATAGGCTTCAAATTGCATTGGATGCAGCGTATGGATTGGATTATTTGCATAATGGTTGTAAGCCTGCAATTGTGCATAGAGACCTTAAGGCCTCCAACATTTTGCTAGACAAAAATATGAAAGCTAAGATTGCTGATTTTGGATTGTCTAGAGCTTTTGCAAATGATATTGATAGTCATGTTTCAACTCGTCCGGCTGGGACATTTGGTTACCTTGATCCTCAGAGTTTTCAAAATTCTGGAAACCTTACAAAAGGGAGCGATGTTTATAGTTTCGGAATAATTTTGCTAGAACTTGTGACCGGAAAACCAGCAGCAAAGAGACAACGAAACAATACCTTCATTCTCCTACTTGAATGGGTCGCCCCTAAACTTGATAGCAAGGATAATATCCAGTCCATTGTTGATCCAAGGTTACAAGGACATTACAGTGATGATTCTGCTTGGAAATTTCTTGAGATTGCCATGTCATGCACTGCACCGTTGGCAAGTCAGAGGCCTGATATAAGTCAAGTTGTCGTTGAACTAAGGGAATGTTTGGCAATGGAAACAAGCATGGAAGAGACCAGTCACAACACCAATTCAAGCAGTTCATTGGATAAGAGTGTTTTGCAATATGATTCAAGCTTTAGTGCTCCATATGCTAGATAG	2751	0.3984	MADAALDPFFPHYGGSFQEAGWRERNMEGNSSPATLTLTMFCNKSKFVSTFAHTDWISIDCGASIGYTDPETEISYQTDTGFVETGEINMVAAEERFDVDFPYFGRQLKTLRSFPKGKRNCYTLNPKQGKNSNYLVRAFFAYGNYDGKNKTPTFDLYLGVNYWTNVNPGDGYQKTEIIHTPTTDTIHVCLLKTSEDIPIISTLEIRPLHNDIYLTPSPSQSLLVLDERIDVGSIPSTSTLFRRFRDDIYDRVWRVDDIFEDEGWQRFNRSVDIDRRSINDSYKLPLNVMLSATQPLNLSAPLYLDYDSFWTEPTERSFRYFVYFHFVEIERLPHGKKRVIDVTVNDEYILRERTLEYLKPVAVTDVTKQDGLSFSISATAESDPPPILNALEVYKLISELASPTNQKDVDAILDIKNTYKIVDCQGDPCVPVNHAWERLKCSYGIDYSNARITSLNMSSCKLTGQIVASFSQLMELESLDLSSNDLSGPVPEFLAELPKLRILNLSGNRLEGSIPKALKEKSDLEMSLDGNPSLCLKQPCRKQKFLIPLIASVSILTVLIILISLGIWVFKMKKLKVDSTVSTKQASEPRNRAFSYSDVLEMTNNLQNLIGEGGFGKVYLGTLKNSTQVAVKLLSHLSVQGHREFRSEVELLMVIHHRHLVSLIGYCEQRGVRALIYEYMVNGNLHHHLSSNKGGGLKWKDRLQIALDAAYGLDYLHNGCKPAIVHRDLKASNILLDKNMKAKIADFGLSRAFANDIDSHVSTRPAGTFGYLDPQSFQNSGNLTKGSDVYSFGIILLELVTGKPAAKRQRNNTFILLLEWVAPKLDSKDNIQSIVDPRLQGHYSDDSAWKFLEIAMSCTAPLASQRPDISQVVVELRECLAMETSMEETSHNTNSSSSLDKSVLQYDSSFSAPYAR	916

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci13g1329	916	Pfam	Malectin-like domain	59	395	IPR024788	-
	Prci13g1329	916	PANTHER	OS07G0107800 PROTEIN-RELATED	57	886	-	-
	Prci13g1329	916	CDD	STKc_IRAK	610	876	-	-
	Prci13g1329	916	Gene3D	Transferase(Phosphotransferase) domain 1	680	904	-	-
	Prci13g1329	916	Pfam	Protein tyrosine and serine/threonine kinase	606	875	IPR001245	GO:0004672\|GO:0006468
	Prci13g1329	916	Pfam	Leucine rich repeat	451	510	IPR001611	GO:0005515
	Prci13g1329	916	SMART	serkin_6	604	880	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g1329	916	PRINTS	Leucine-rich repeat signature	476	489	-	-
	Prci13g1329	916	PRINTS	Leucine-rich repeat signature	497	510	-	-
	Prci13g1329	916	FunFam	Leucine-rich repeat receptor-like protein kinase	579	679	-	-
	Prci13g1329	916	Gene3D	Ribonuclease Inhibitor	408	537	IPR032675	-
	Prci13g1329	916	SUPERFAMILY	Protein kinase-like (PK-like)	587	876	IPR011009	-
	Prci13g1329	916	ProSitePatterns	Protein kinases ATP-binding region signature.	610	632	IPR017441	GO:0005524
	Prci13g1329	916	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	724	736	IPR008271	GO:0004672\|GO:0006468
	Prci13g1329	916	ProSiteProfiles	Protein kinase domain profile.	604	880	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci13g1329	916	SUPERFAMILY	L domain-like	447	525	-	-
	Prci13g1329	916	FunFam	Leucine-rich repeat receptor-like kinase	407	537	-	-
	Prci13g1329	916	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	680	889	-	-
	Prci13g1329	916	Gene3D	Phosphorylase Kinase; domain 1	586	679	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci13g1329	Prci-Chr13	11989039	11997230	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci13g1329	36	916	Receptor kinase-like Gene Family	AT2G19210	40.819	0.0	632

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Prci13g1329		Malectin_like	6.8e-84	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci13g1329	-		-	pcin:129289896	1783.46