Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1322 ATGGACAAGCGTGAGTGCAAGCTTTGCTTCAAAACCTTCGCTAATGGCAGAGCTCTGGGAGGTCACATGAGGTCTCACATGAAGAAGCTTCCACTACCTTCCAAACCAGAGGAATCTCGATCACCTTCTCCTACCTTACTGAGTTTCGAGGCTGACCCGCCTTCTTCTTCTTCTTCTTCGTCTGAAGATGAAGGAGACAACGGTCTGAGCTATGGTGTAAGAGAGAATCCAAAGAGAAGCCTTCGAGCTGTAGATCCTGAGTTTTCGTTCGTTGTGGATACTAATGGCTCTGTGATCCTCCAAGACAGAGAGAGCGAGACGGAGACCGAGTCATCGAAGAAGACAACTCGAAAACGATCCAAACGTGCTTGGAGACTCGGTAGTTTCGATGGTGATGATTACTACAGTCACAAGAAAATTCAGAAACAAGAAACCGTGGAAATGCTCAAATCGAACGAATTGTGTAAGACCGAGTCGTGGATTGCGGAGGCTGAACCGGCGAGTTCGATCTCCGATACGACCACCGAAGAAGACGTCGCCTACTGCCTTATGATGCTTTCTAGAGACAAATGGAAGGGACAAAACGATCTGAAAGACCAAGACGACGTCGCGGGGGAAGACGACGACGAAGAAGAAGACGATGGTGATGAATCCGAGGGGGCTCTCAAACCGTCGAAATCCAGAGTTCGTGGGAAGTACACGTGCGAGACTTGCAAGAAGGTGTTTCGATCTTATCAAGCACTTGGTGGTCACAGAGCTAGTCACAAGAAGATCAAAGTGGAGCTCGAGAATCATAATAATGATGGAGGCACATCATCTTCTTCAATGATCGATAAGAAAATTCACGAATGCCCTATCTGTTTCAGAGTGTTCTCTTCGGGTCAGGCTCTTGGAGGACACAAGAGGACCCATCTCACTGGTTCTTCGACATTACCGACTCGAGCTTCCACCAAATTAGTTGAAAATTTCATAGACCTCAATCTTCCTGCTCCAACCGATGAAGACGATGTCAGCAAGATCGACAATTCTGGAGTTTCAGATGCAGAATTCGTCCTCGATCGCATCAGACAGTGGAGAAGTTTCGGTGCGCTAGCACTTTGA 1101 0.4759 MDKRECKLCFKTFANGRALGGHMRSHMKKLPLPSKPEESRSPSPTLLSFEADPPSSSSSSSEDEGDNGLSYGVRENPKRSLRAVDPEFSFVVDTNGSVILQDRESETETESSKKTTRKRSKRAWRLGSFDGDDYYSHKKIQKQETVEMLKSNELCKTESWIAEAEPASSISDTTTEEDVAYCLMMLSRDKWKGQNDLKDQDDVAGEDDDEEEDDGDESEGALKPSKSRVRGKYTCETCKKVFRSYQALGGHRASHKKIKVELENHNNDGGTSSSSMIDKKIHECPICFRVFSSGQALGGHKRTHLTGSSTLPTRASTKLVENFIDLNLPAPTDEDDXVSKIDNSGVSDAEFVLDRIRQWRSFGALAL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1322 367 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Prci13g1322 367 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 352 IPR044303 GO:0006355
Prci13g1322 367 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Prci13g1322 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 304 IPR013087 -
Prci13g1322 367 MobiDBLite consensus disorder prediction 195 225 - -
Prci13g1322 367 MobiDBLite consensus disorder prediction 39 66 - -
Prci13g1322 367 Pfam C2H2-type zinc finger 282 305 - -
Prci13g1322 367 Pfam C2H2-type zinc finger 5 29 - -
Prci13g1322 367 Pfam C2H2-type zinc finger 233 257 - -
Prci13g1322 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Prci13g1322 367 SMART c2h2final6 282 304 IPR013087 -
Prci13g1322 367 SMART c2h2final6 4 26 IPR013087 -
Prci13g1322 367 SMART c2h2final6 233 255 IPR013087 -
Prci13g1322 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Prci13g1322 367 MobiDBLite consensus disorder prediction 201 218 - -
Prci13g1322 367 Gene3D Classic Zinc Finger 230 304 - -
Prci13g1322 367 MobiDBLite consensus disorder prediction 21 78 - -
Prci13g1322 367 SUPERFAMILY beta-beta-alpha zinc fingers 233 304 IPR036236 -
Prci13g1322 367 ProSitePatterns Zinc finger C2H2 type domain signature. 284 304 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1322 Prci-Chr13 11760179 11761562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1322 1 336 C2H2 Transcription Factor Family AT3G60580 41.092 1.41e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci13g1322 zf-C2H2_6 3.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1322 - - pcin:129291551 667.151