Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g1321 ATGCCTCTCATGATCGATCACCAATCTAGCTCCAAGTACTTCTGCAAGATCTGCAAGAAAGGATTTGGCTGTGGCAGAGCTCTCGGAGGCCACATGAGGGCGCACGGCATCGGAGATGAGAGCAGCGGAGCTATGGATGACGATGACGACGCGGCAAGCGACTGGGAAGATGGCAAGCTTGTTGGTGGAGACGACAATAATAATGCTAATGTTCCTCCGGCTAACAAGCGGATGTACGCTTTGAGGACGAACCCTAATCGGCTAAAGAGTTGCAGGGTTTGTGAGAATTGCGGGAAAGAGTTCTTGTCTTGGAAGTCCTTCCTTGAACATGGCAAGTGCACTTCCGATGATGCCGACGAGTCGTTTGTTTCATCGCCGGGATCCGACGGCGATGATGTGGCGGGTCGGAGAGGTTGTGGTTGGTCCAAGAGAAAGAGGTCATTTCGAGCCAAAGTGGGCAGCTTCAATAATAATAATAATAATAATCCTAATTGCTCTTCATCCAATGAGGAAGAAGATCTCGCTAATTGTTTAATGATGCTGTCCAACGCCACTGTGGATCCTCTCGTGCCTGACGCCGACGAATCATCGGCATCGGCGAGCAAAGACGATGAGAGAAGAAACGCTAATTTCAGCTTCATGGCTCCCATCTCTCAAGTCCCTTTGGATCATAACAAAGCCAAGGAGGTAAGCAATAAGGGCTTGTTTGAATGCAAAGCATGCAAGAAGGTCTTTAATTCCCATCAAGCATTGGGTGGTCACAGAGCCAGCCACAAGAAAGTCAAAGGCTGCTTCGCTGCTAGGCTCGACAACCTCGAAGATGGCGGTGGCGGCATGGGCGGCGCAACCGGTGGCGCCGATGATGATGTCATCACACATGAAGACCAACTCTTTCCAACGAATAAATCAAGCAATTCAATGCCTCATTTCGATCATGGCTCCAACAACGCTGCCTCGTCGTCTAAGAGGAAATCGAAAGTTCATGAATGCTCAATATGTCACCGAGTTTTCTCGTCGGGACAAGCACTGGGAGGACACAAGAGGTGTCATTGGATTACGTCGAACGCGCCGGATGCTTCGACGTTGGCTAGATTTCAACAATTTCAAGACCACATAGAACAACACATGATGAATCATAATAGTAACAATAATCAAATACTTAAGTTTGACGATCCCGACCCAATTGATCTAAAGCTGGACCTCAACCTCCCGGCTCCGTCGCCCCCAGAACTTGCCGGCCGGTGTAATGTCTCCGCAGGGATTTACTTACAGTCATGGGTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGGAGCAACATAAAAATGACAATAGTACTCACGACATGGACATTGAGAATAACGATGAAGATCAATGCAAGAACAATGACAAAAAACTTAATATTAGCAATGGTACGACGATGCAGAGCATGGAAGACGAAGCTGACAGTAAGGTGAAGCTAGCGAAATTAAGTGAACTAAAGGACATGAACGTAGGAGGGAGTTCTTCGCCATGGTTGCAGGTGGGAATCGGTTCAACTACAACTGACGTGGGAACTGACCCATAA 1569 0.4831 MPLMIDHQSSSKYFCKICKKGFGCGRALGGHMRAHGIGDESSGAMDDDDDAASDWEDGKLVGGDDNNNANVPPANKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSDDADESFVSSPGSDGDDVAGRRGCGWSKRKRSFRAKVGSFNNNNNNNPNCSSSNEEEDLANCLMMLSNATVDPLVPDADESSASASKDDERRNANFSFMAPISQVPLDHNKAKEVSNKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLEDGGGGMGGATGGADDDVITHEDQLFPTNKSSNSMPHFDHGSNNAASSSKRKSKVHECSICHRVFSSGQALGGHKRCHWITSNAPDASTLARFQQFQDHIEQHMMNHNSNNNQILKFDDPDPIDLKLDLNLPAPSPPELAGRCNVSAGIYLQSWVGGGGGGGGGGKEQHKNDNSTHDMDIENNDEDQCKNNDKKLNISNGTTMQSMEDEADSKVKLAKLSELKDMNVGGSSSPWLQVGIGSTTTDVGTDP 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g1321 522 ProSitePatterns Zinc finger C2H2 type domain signature. 330 350 IPR013087 -
Prci13g1321 522 MobiDBLite consensus disorder prediction 298 321 - -
Prci13g1321 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 328 350 IPR013087 -
Prci13g1321 522 MobiDBLite consensus disorder prediction 497 522 - -
Prci13g1321 522 MobiDBLite consensus disorder prediction 431 464 - -
Prci13g1321 522 PANTHER OS02G0659100 PROTEIN 4 515 - -
Prci13g1321 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Prci13g1321 522 Gene3D Classic Zinc Finger 233 350 - -
Prci13g1321 522 SMART c2h2final6 236 258 IPR013087 -
Prci13g1321 522 SMART c2h2final6 13 35 IPR013087 -
Prci13g1321 522 SMART c2h2final6 328 350 IPR013087 -
Prci13g1321 522 Pfam C2H2-type zinc finger 236 260 - -
Prci13g1321 522 Pfam C2H2-type zinc finger 13 35 - -
Prci13g1321 522 Pfam C2H2-type zinc finger 327 352 - -
Prci13g1321 522 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Prci13g1321 522 SUPERFAMILY beta-beta-alpha zinc fingers 235 350 IPR036236 -
Prci13g1321 522 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Prci13g1321 522 MobiDBLite consensus disorder prediction 441 464 - -
Prci13g1321 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 35 IPR013087 -
Prci13g1321 522 MobiDBLite consensus disorder prediction 38 73 - -
Prci13g1321 522 SUPERFAMILY beta-beta-alpha zinc fingers 11 36 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g1321 Prci-Chr13 11738755 11740344 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g1321 110 403 C2H2 Transcription Factor Family AT1G02040 35.235 1.95e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci13g1321 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g1321 - - gmx:100793846 601.668